Id Trinity | FTRINITY_DN57805_c4_g1_i12 |
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Name Transcript | Ll_transcript_58314 |
Sequence | GTTTTTTCTTTTCTTTCTTAACACAAAAAGAAAAGAAGCTTTGCAAGTTTACTGTAAATATGGAAATCATATTTGAAGACCACTAACAATTAAGAATGGT GATTTCTTTAAGAAATTATCACTAGATTTGAAAAAAGTTATGTACACATTTTTTAGTTTATATTTATAGTGTAATGTTTCAGGCTTGAGGAAAATAAGAC GCTTGTCCTTACTCCATTTGAGAAAAATATTGATATCTGGAGACAGCTCTGGCGGGTTGTTGAGCGCAGTGATTTGGTAAGTTGAAATGATCTTTTGACG TTTTACCTGGAAAATTCTACTTTTGGGTCAATGAAGGTTTTAAACTTATCTTTTTTATCAACTGTGTAATTCAGAGGTAAGTACGACTTGCCACTTACCA CAATGCAGAATGATTTCACATGCATTTTTAATAGTTTTTGTTGAAATTATACTTGGTTACAGTGTTACACTACCATATATGTTACAACGATTTCTTAATT AGAAATGAACTCAATGAAGATGGGCATGGTACCCATTTCATGAATGGTTCTTGCGAATATTTATGATTACCGAACAATTGTGCATATCCATGGATTGTTT CTCAATATAGAGTACTCATTCATTTTCTTGAAGAAAATAAGCTTTTATTCTTTAAATGTATAAATTACTTTTCTGTTGGTGAGTTCAATCTCACTTTCCT TATGGCATATGGTGGATGTTGTACTTGGTGAGGTGAGTGTTAAATGAAAGTACAATATTTTTAATCTTCAGATATATTTGATCTCCTTTCCTTAATTATA TAAAATGGTTATTATCATATTGACAGATAAGATACAGAGGCAATCCCACATTTGTCGATCTTTAGTTATTTATTCCTTTTTATGTGTATCGACTTTTGAT TACATTATAAAAGCTGCCCTCTTCTTTGATTCTGTTCATTTTTCAAAGAAGATGGAAAGTGTCTTCAATTAGCCAGACCTGCATCATTAGCTGGAAAATG AAGGAAAGGTCCACCAGTTCACCTAAGATGTTCCTTAAAACAATATATTTTTTTTACTTTAAGTTTTTGTTTTAAAAAAATGTTGGCAAGGATCATGGAT GCTTACTTTTATCCCTCAGTTATACATTCATTCTTTTCTACAATTCTTCCCACCAACATAAGATATTTTCCCTAAAAGCATTTGCAAATTGCTAATTTTG ATTTTATCACATATAATAGTGATTTTTATCTGGATTTCCTCATTGTTGTTAATTTTAAGTTTCATGAAATCTTTAAGATGATCTCATTCTCTTGCATCTT TTTACCAGCTTGTTATGGTCGTTGATTCGCGGGATCCTCTGTTCTATCGCTGTCCTGATCTTGAGGCTTATGCACGGGAGGTTGATGAGCATAAGCGCAC ATTGCTTTTGGTTAACAAGGCAGATCTGTTACCTACTTCTATCAGAGAGAAATGGGCAGAATATTTTCGTGCTCATGATATTCTCTTCATTTTCTGGTCA GCTAAAGCTGCTACTGCAGTTCTGGAAGGCAAGAAGCTTGGTTCATCATGGGAGGCTGATAACATGGGGGAAACTAATAACCCAGACACAAAGATATATG GAAGGGATGAGCTTCTGGCCCGCTTGCAATCAGAGGCTGAAGAGATAGTTGAGAGGAGAAATTCAGCCTCCTCTGACACAGGACCATCTAATGTTGGTAG TTCGTCGTCAGGTAATGTAATTGTGGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATCAATGCTCTGGTTGGTCAAAAAAAGACCGGTGTT ACCTCTACTCCAGGGAAAACAAAGCACTTCCAGACATTAATTATTTCCGAAAAACTGACCCTTTGTGACTGCCCTGGATTAGTTTTTCCATCTTTCTCAA GCTCAAGATATGAGATGATTGCTTCTGGAGTGTTGCCTATTGATAGGATGACTGAACACAGGGAATCTGTCCAAGTTGTAGCTGATAGAGTCCCAAGACA TGTCATCGAGGCGACTTATAAGATCAAACTTCCTAGACCTAAGTCATATGAGTCCCAAGTCCGCCCCCCATTGGCATCTGAACTTATGAGATCGTATTGT GCTTCTCGCGGGTATGTTGCTTCTAGTGGACTTCCCGACGAAACTAGGGCTTCCCGTCAGATTCTGAAAGATTACATTGATGGGAAGCTGCCACACTATA CAATGCCCCCTGGTGTGTCAAACGAGGAACTCACTGTAGAGGATCCTGAAGGACATGACTCTGATAACTTGCAGGAGTCAGATTCATCTGGTATTGAAGA TTCTTCAGATGTTGAGAAAGAAGTTGCACCAGCAAATCTTGAACACTTATTGGATGACCTCAATTCATTTGACATCGGTAATGCACTTGCTACTTCAAAG AAAAGCAGTGTTAAGAAGTCCAAGGAATCTCAGAAGCATCATAAAAAGCCTCAGAGGAAGAAAGATCGTACATGGAGGGCCGGGAATGATGGTGGTGATG GAACGCCGATTGCAAGAGTCTTTCAGAAACCAGTAAACACAGGTCCCTCGAAGGTCTGATAAGGTAATGCCCTCAGGTTTTTGTACATGTTGTCTGTTAG AGTCATAAGTACGTTGTTGATCTGAGGTGTGTGGTGGAACAAGTTATAAATGGTGTTTTTTTGTAAGGCATTTCACAAATAGAACGTAGGCATTTATACT ACTCAAGGTTATTCACAGCAGAGTTCTTATTGATGTGAGGAAAATTGTCCTAGGATTGAAGAATAATATTATCATTTTAATTATTGTAAACCTTTGATAT GTTAAAGTCATCTTTAATTTTGATTATAATCTATTTGACTCGGGAAGAATCTATATTGAAAAAATCAAATTTGTT BLAST |
Tissue | flowers |
Gene name | LI_gene_71805; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_58314
Blastp | GTPase LSG1-2 from Arabidopsis with 67.14% of identity |
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Blastx | GTPase LSG1-2 from Arabidopsis with 67.63% of identity |
Eggnog | Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity (By similarity)(COG1161) |
Kegg | Link to kegg annotations (AT1G08410) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019448890.1) |
Pfam | 50S ribosome-binding GTPase (PF01926.22) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |