| Id Trinity | FTRINITY_DN57805_c4_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_58306 |
| Sequence | AATACTTATACGGGTTAAAGTGTTAAACCCTAAATTGCCGAAAGCCACAACACAAGTTTATTCGAGAAAAGAAAAAGCGGTGGAACGAAGCTGAAGTTGG GTGACTCTGAATTTGAGGGTTTAAGGTGAGATAAGAAAACAACGGTGGTTGATTGATTCCATTGGCAACAATGGGAAAGAACCAGAAAGTAGGGTTAGGG AGATCCCTTGTTAAGCAACACAATCATATGATTCAACAAACCAAAGAAAAGGGTCGTATCTACAAGAAGAAGTTTCTAGAATCATTCACTGAAGTTACCG ACATCGCCGCCATCATTGAAAAATCGGAAAACCCCGACGCCGATTCCGATTCCGATGCCGATGTTCCTTTTCTGCCCCCCGCACCGCCTACCCTTCGCAT CAATATGGATCCAAGGTCCGAGTCTGTTGACTTGACGCCTGAAGAGATGAAGGAGCAGCAGAAGAGGGAGGAGGCACTGCATGCTAGCAGTCTCCGAGTT CCACGCAGGCCACCGTGGACGGCAGACATGTCTGTGGATGAGCTTGATGCTAATGAAAGACAATCTTTCTTGACTTGGCGTCGCAGCCTTGCTAGGCTTG AGGAAAATAAGACGCTTGTCCTTACTCCATTTGAGAAAAATATTGATATCTGGAGACAGCTCTGGCGGGTTGTTGAGCGCAGTGATTTGGTAAGTTGAAA TGATCTTTTGACGTTTTACCTGGAAAATTCTACTTTTGGGTCAATGAAGGTTTTAAACTTATCTTTTTTATCAACTGTGTAATTCAGAGGTAAGTACGAC TTGCCACTTACCACAATGCAGAATGATTTCACATGCATTTTTAATAGTTTTTGTTGAAATTATACTTGGTTACAGTGTTACACTACCATATATGTTACAA CGATTTCTTAATTAGAAATGAACTCAATGAAGATGGGCATGGTACCCATTTCATGAATGGTTCTTGCGAATATTTATGATTACCGAACAATTGTGCATAT CCATGGATTGTTTCTCAATATAGAGTACTCATTCATTTTCTTGAAGAAAATAAGCTTTTATTCTTTAAATGTATAAATTACTTTTCTGTTGGTGAGTTCA ATCTCACTTTCCTTATGGCATATGGTGGATGTTGTACTTGGTGAGGTGAGTGTTAAATGAAAGTACAATATTTTTAATCTTCAGATATATTTGATCTCCT TTCCTTAATTATATAAAATGGTTATTATCATATTGACAGATAAGATACAGAGGCAATCCCACATTTGTCGATCTTTAGTTATTTATTCCTTTTTATGTGT ATCGACTTTTGATTACATTATAAAAGCTGCCCTCTTCTTTGATTCTGTTCATTTTTCAAAGAAGATGGAAAGTGTCTTCAATTAGCCAGACCTGCATCAT TAGCTGGAAAATGAAGGAAAGGTCCACCAGTTCACCTAAGATGTTCCTTAAAACAATATATTTTTTTTACTTTAAGTTTTTGTTTTAAAAAAATGTTGGC AAGGATCATGGATGCTTACTTTTATCCCTCAGTTATACATTCATTCTTTTCTACAATTCTTCCCACCAACATAAGATATTTTCCCTAAAAGCATTTGCAA ATTGCTAATTTTGATTTTATCACATATAATAGTGATTTTTATCTGGATTTCCTCATTGTTGTTAATTTTAAGTTTCATGAAATCTTTAAGATGATCTCAT TCTCTTGCATCTTTTTACCAGCTTGTTATGGTCGTTGATTCGCGGGATCCTCTGTTCTATCGCTGTCCTGATCTTGAGGCTTATGCACGGGAGGTTGATG AGCATAAGCGCACATTGCTTTTGGTTAACAAGGCAGATCTGTTACCTACTTCTATCAGAGAGAAATGGGCAGAATATTTTCGTGCTCATGATATTCTCTT CATTTTCTGGTCAGCTAAAGCTGCTACTGCAGTTCTGGAAGGCAAGAAGCTTGGTTCATCATGGGAGGCTGATAACATGGGGGAAACTAATAACCCAGAC ACAAAGATATATGGAAGGGATGAGCTTCTGGCCCGCTTGCAATCAGAGGCTGAAGAGATAGTTGAGAGGAGAAATTCAGCCTCCTCTGACACAGGACCAT CTAATGTTGGTAGTTCGTCGTCAGGTAATGTAATTGTGGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATCAATGCTCTGGTTGGTCAAAA AAAGACCGGTGTTACCTCTACTCCAGGGAAAACAAAGCACTTCCAGACATTAATTATTTCCGAAAAACTGACCCTTTGTGACTGCCCTGGATTAGTTTTT CCATCTTTCTCAAGCTCAAGATATGAGATGATTGCTTCTGGAGTGTTGCCTATTGATAGGATGACTGAACACAGGGAATCTGTCCAAGTTGTAGCTGATA GAGTCCCAAGACATGTCATCGAGGCGACTTATAAGATCAAACTTCCTAGACCTAAGTCATATGAGTCCCAAGTCCGCCCCCCATTGGCATCTGAACTTAT GAGATCGTATTGTGCTTCTCGCGGGTATGTTGCTTCTAGTGGACTTCCCGACGAAACTAGGGCTTCCCGTCAGATTCTGAAAGATTACATTGATGGGAAG CTGCCACACTATACAATGCCCCCTGGTGTGTCAAACGAGGAACTCACTGTAGAGGATCCTGAAGGACATGACTCTGATAACTTGCAGGAGTCAGATTCAT CTGGTATTGAAGATTCTTCAGATGTTGAGAAAGAAGTTGCACCAGCAAATCTTGAACACTTATTGGATGACCTCAATTCATTTGACATCGGTAATGCACT TGCTACTTCAAAGAAAAGCAGTGTTAAGAAGTCCAAGGAATCTCAGAAGCATCATAAAAAGCCTCAGAGGAAGAAAGATCGTACATGGAGGGCCGGGAAT GATGGTGGTGATGGAACGCCGATTGCAAGAGTCTTTCAGAAACCAGTAAACACAGGTCCCTCGAAGGTCTGATAAGGTAATGCCCTCAGGTTTTTGTACA TGTTGTCTGTTAGAGTCATAAGTACGTTGTTGATCTGAGGTGTGTGGTGGAACAAGTTATAAATGGTGTTTTTTTGTAAGGCATTTCACAAATAGAACGT AGGCATTTATACTACTCAAGGTTATTCACAGCAGAGTTCTTATTGATGTGAGGAAAATTGTCCTAGGATTGAAGAATAATATTATCATTTTAATTATTGT AAACCTTTGATATGTTAAAGTCATCTTTAATTTTGATTATAATCTATTTGACTCGGGAAGAATCTATATTGAAAAAATCAAATTTGTT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_71805; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_58306
| Blastp | GTPase LSG1-2 from Arabidopsis with 67.14% of identity |
|---|---|
| Blastx | GTPase LSG1-2 from Arabidopsis with 67.63% of identity |
| Eggnog | Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity (By similarity)(COG1161) |
| Kegg | Link to kegg annotations (AT1G08410) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448890.1) |
| Pfam | 50S ribosome-binding GTPase (PF01926.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |