| Id Trinity | FTRINITY_DN57996_c1_g2_i13 |
|---|---|
| Name Transcript | Ll_transcript_260249 |
| Sequence | CGAAAACCAAAAAAAATAATATTTATTAACACACTTTCTCTCTCTTCTCCCTTTCTTCTACCTCACTTCATCAATAAATACCCCACAATCCAAATCACTA TTTCAGATCGAAATTTATTCTCTTTTCTCAATTGGGTCATCGATCAAATCCCATTTTCTCCATAACACTACTGTAGAATAAATACTAAATCTGCTTTTCT TATACCCCAAAATTCCCATTTTTATTTATTCTTCAACTTTTTTCCGATCAGAATTCTTCACCCATGTCTAGAATCTTCTCAAGATGGAAGAAAGTGAAGG AAATGCCATCACTTTCAGATACCCACTTCGCTTTTTCCTTGAATAATCGTTGCCTGAACCGAACCGGGTTCAAATTCAACCAAGTGTGTCCAATCTCGAC CCACCTGAAGAATTACAAACTCCACATTATCTCCGCCCATCGCCGCCGTGAACCGCTCGTCGGCGTCCAGGAGCGGTACAAGTGGGATCGGAGTGGCTCC GATGACATCGTCAACCCGACCCGGAAGATTCGGGTCGAGTCGAATTGTCCACGTTGCACCAAAGACATGAACCTCATATTCTCCAATAACCATTTTCCAC CTCCAGATTCAAATTCAGGTTTTGAATCTTTTGATTCCAATTTAGCATCACCAATTGAAACTGAAGATGGTGGTGGTTATCAATCTGTGAATATTTGCCC AAATTGTAAAAGTGCTTATCACTTTAGACCTAATAGCACTGCACCTTTGCAAGGTACATTTGTGGAGATTGGAAGGGGCAGTGATAATAACAATAGTATT GTTAAGAGTAGGAATAGTAAAGTTCCTAGGAGGATCACACATAGTAAAGGTAGTAGTAGTAGTAGTGGTAAAAGTGGTAGTGTTGTGGGTGGGGATTATG AGCTTAAAAGGGCTAGTAATTGGCTTGAAGTGACAGTGTGGGATAATATAAGATCAGCCAAAGTTACTGGTCATGATAATGGGGAGCCACCCGAGAGTTG TCCGCCACCACCACCGGGTGGTAATGATGGGAATGGTTTGGCTGTGCATAATCCTCCAGGCCCACCTTTTGTACCCGGGGTTAATGTTATCCGGCATACC GGGCCGAGGGAAGGTGGTGCTGGCAGCGGAAGAGGAGGTGAGGGAAATGGAGAGAAGACTACTTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCCTCTC CAAAGGAGATCTGCAAGGGTCTTGACAAGTTTGTTATTGGCCAAGACAGAGCCAAAAAGGTGCTTTCTGTAGCTGTATATAACCACTACAAGCGAATATA CCATGCCACTTTGCAGAAAGGGTCAGGACCAGATTCAGGAATTTTAGAAGGATTTGATGATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTG ATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCAAAAACACTAGCTCGATTTGTGAATGTTCCTTTTGTCATTGCCGATGCGACAACCTTAACACAGG CTGGTTATGTTGGAGAAGATGTTGAATCAATACTCTACAAACTTCTTGCAGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGGATAATTTACATTGA TGAAGTTGACAAGATAATTAAGAAGGCTGAGAGCTTAAATATCAGTCGCGATGTTTCTGGCGAGGGTGTTCAACAGGCATTATTAAAAATGCTGGAAGGA ACGATAGTAAACGTTCCTGAGAAAGGAGCAAGGAAGAATCCACGAGGAGATAATATACAGATGGACACAAAGAACATTCTTTTTATATGTGGTGGAGCAT TTATTGATCTTGAAAAAACGATTTCAGAGCGACGACAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCAAATATGAGAGCTGGTGGAGTAACAGA TTCAGCTGTAACATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGAAGATTTCCCATTTTAGTC AGCTTGTCAGCTTTAACTGAAGACCAACTTATGCTGGTCCTCACAGAACCAAAAAATGCACTTGGTAAGCAGTACAAGAAATTATTTAGCATGAATAATG TAAGCAGCTCCTGTTCTCCCTTGCTCTCTTTCTCTCTCTCCCTCTGTGTGTTGTGCGCACACATGTGTGTGCACGGCTGTGAACCTCACTCTGTCTGTGT TGTGAAAACCTGAACCCGCCTGGCCATTGCCAGGTCCGGATAATCCCATTCCAACAAAATTTGGGCATATGGAGATGCAAATCTTTAAATAGATTCAAGT GATTAGTTTAATGGTTGTGTATGGTATACCATTTCTAATAATGATTCCTGACTTAGTATATCTTATTTCAAATTTTTATATAATTTATTGGTTGCAGTCT CCTTCTCATCCTCTTGCCTTCTTATATTCATATGACACCAAAGAATCCCTTAATCTTTCCTTATTTTACCTTCATGTGATTTGTTGAATTGACTGTAGCC TTCCTTGAAGCCACTTCCTGGTGATATCTTTTACCATTGTACTTTTGAACACGACTTATAAACCCGATGAAGACCGACCTTGAATGATTTGGTTTGTTAC TTCTTTGGAGCCATTTGGTATTGGTCTTTTCTAGGTCAAAACTGGTTAACTTGTATAGGATTTTTTGTGCAAATCACTCAAATTGCCATGTCTGTCCATG TGTATGTTCATTTGTTTATTGCTGAATATTTACGTCTACACTGCAGGTAAAGCTATACTTTACAGAGAAAGCTCTAAGACTGATTGCAAACAAAGCTATG GCCAAAAATACTGGCGCCCGGGGTTTAAGAGCCCTACTCGAAAGCATTTTAACCGAAGCCATGTTTGAGATTCCCGATATTAAGACAGGAACTGACCGGG TTGACGCGGTTGTTGTTGATGAGGAGTCGGTAGGATCAGTAAATGTACCTGGATGTGGAGGAAAAATTCTTCGTGGAGATTGTGCTTTGAAGCAATACAT AGCTAAGGTCAAGGATTCAATGGTTAATGTTGAGGTAGTCGAAACAGACTTAACAGGGGGGGATTCAGAGCTTTCATCAAGAGCCATGAGCATGTAGTTT TACTTTATCTACTATATTCAATGTATAATTTATCATTTTCATTGTTGTTTGTAAAGATAACATTCATAATTTGTTGTAATTATCCCTTGTATAACAACAT AGCTACCAGCTTAGGGTCACTGGATGAAAAGGAATTAGAATAAAATAAAGGGTTAGTGTAGCATTGCTAACTTATTATATACAAAGTTTCAGGTTTTGAG GAATTCTGACTGAACTTTTCTTCTTTTGTAACTTGTCCTCACTGAGGTTAAAGATCAATTTCTGAAGGCACTGATTCTTTGATATCATTTTTTCTCTTCC TCTATTGAAATCCTTCCTCTTCCCCTCCCTTTTTATATGTAACAAGG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_73388; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_260249
| Blastp | CLP protease regulatory subunit CLPX3, mitochondrial from Arabidopsis with 57.96% of identity |
|---|---|
| Blastx | CLP protease regulatory subunit CLPX1, mitochondrial from Arabidopsis with 84.71% of identity |
| Eggnog | ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP (By similarity)(COG1219) |
| Kegg | Link to kegg annotations (AT1G33360) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453239.1) |
| Pfam | AAA domain (Cdc48 subfamily) (PF07724.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |