| Id Trinity | FTRINITY_DN58085_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_134618 |
| Sequence | ATTTTATATACGGTTATTTTATCATTTACAATTTTTTAAGTATTATTAACTCTTAATAATAAAAATCAATGATAGATAATCCTCGTGAATGAAAAAAATA TATACCTGTGAATGTCCCGGCTCGGACGGACATAGTACCTCCTGCTACTAAAACGACGGCGTTGATGAAACAGCGATTTAGTTATCTTCCTTCTCAATTC TCATTATTCAATTTGTTTGGGAAAGTGAGAGAAGATGAGTCGAAACGATTCCAAGTATTTCTCTACCACCAAGAAAGGTGAAATCCCTGAGCTCAAAGAA GAACTCAATTCTCAATACAAGGACAAAAGAAAAGATGCTGTGAAAAAGGTTATTGCTGCAATGACTGTTGGGAAGGATGTCTCATCGTTGTTCACAGACG TGGTGAACTGCATGCAAACAGAAAATTTGGAACTTAAAAAGCTAGTCTACTTATATCTGATAAATTATGCAAAGAGCCAACCTGACCTAGCAATACTTGC AGTAAATACATTTGTGAAGGATTCACAAGATCCAAATCCTTTGATTCGTGCCTTAGCTGTGAGGACAATGGGATGCATTCGCGTTGATAAAATTACTGAA TATCTATGTGATCCCCTTCAAAGATGCCTAAAGGATGATGATCCATATGTTCGTAAGACAGCTGCCATTTGTGTTGCCAAACTTTATGACATAAATGCTG AGTTAGTTGAGGACAGGGGCTTTTTGGAATCCCTGAAGGATCTGATATCAGATAATAATCCAATGGTTGTAGCTAATGCAGTAGCAGCGCTTGCTGAAAT TCAGGAAAATAGTACTAGACCCATTTTTGAGATCACAGTTCCCACATTGTCAAAGCTCCTTACCGCTTTAAATGAATGTACAGAATGGGGTCAAGTTTTT ATATTGGACGCTCTTTCAAGATACAAGGCAGCTGATGCCCGCGAAGCAGAAAACATAGTAGAAAGAGTTACTCCACGGTTACAACATGCAAATTGCGCAG TTGTTCTGTCAGCTGTTAAGATGATCCTTCAACAAATGGAGCTGATCACCAGTACTGATGTGGTTCGGAATCTTTTCAAAAAGATGGCCCCTCCTCTTGT TACATTACTCTCTGCAGAACCTGAGATACAATATGTAGCACTGCGGAATATCAATCTTATAGTACAAAGAAGACCAACAATTCTTGCTCATGAAATTAAG GTGTTCTTCTGTAAGTACAATGATCCTATCTATGTGAAAATGGAAAAATTGGAGATTATGATAAAACTTGCTTCAGACCGAAATATAGACCAGGTTTTGT TGGAATTTAAAGAGTATGCCACTGAAGTTGATGTAGATTTTGTTAGAAAGGCTGTTCGTGCAATTGGTCGTTGTGCTATCAAATTAGAGAGAGCAGCTGA GCGTTGCATTAGTGTTTTGCTCGAGTTGATCAAGATAAAAGTAAATTACGTGGTTCAAGAGGCAATCATTGTTATCAAAGATATATTTAGAAGATATCCT AACACATATGAGTCCATAATTGCTACACTTTGTGAGAACTTAGACACCTTGGATGAGCCGGAAGCCAAGGCATCAATGATCTGGATTATTGGTGAATATG CGGAAAGAATTGACAATGCTGATGAACTTCTTGAAAGTTTCTTGGAAAGTTTCCCTGAAGAACCCGCCCAAGTCCAACTACAATTGCTGACTGCTACAGT CAAACTTTTCCTTAAGAAGCCAACTGAGGGACCACAGCAGATGATTCAGGTTGTTTTGAACAATGCCACAGTGGAGACAGATAATCCGGATTTGCGAGAT CGTGCATACATATATTGGCGTCTCCTTTCAACTGACCCCGAGGCAGCTAAGGACGTTGTGTTAGCTGAGAAGCCTGTTATAACTGATGACTCAAATCAGC TTGAACCTTCTCTACTTGATGAGCTTCTTGCCAATATTGCTACATTATCTTCTGTTTATCACAAGCCCCCAGAAGCTTTTGTAACTCGTGTACTCTCTTC AGCTCAGAGAACTGAAGAAGAAGACTATCCCGAGGGAAGTGAAACAGGGTATTCTGAATCATCTGCAAATCCTACAAATGGTATTGCATCACCGCCTGCT ACCAGGCAATCAGCACTTGCATCTGCAACAGCAGCACCAGCTACACCTCCATCTGTTGTACCTGTGCCAGATTTACTTGGCGATTTAATCGGCATGGATA ATAATTCAATTGTTCCTCTGGATCAGCCAGTTACTCCTACTGGGCCTCCATTGCCTATTTTAGTACCTGCTTCAACTGGTCAGGGTTTACAAATCAGTGC ACAAGTGGTTAGACGGGATGGTCAAATATTTTACAGTTTGTTGTTTGAGAACTCCACTCAGGTTCCACTTGATGGCTTTATGATTCAATTCAACAAGAAC GCATTTGGTCTTGCAGCTGCTGGACCCCTACAGGTTCCACAAATACAACCTGGAACATCAGCTAGGACACTCCTTCCCATGGTCCTGTTCCAGAATCTGT CCCAAGGTCCTCCTAGCTCAGTTTTACAGGTTGCTGTGAAAAACAATCAACAGCCTGTGCTTTATTTCAATGACAAATTCTCATTGCATGTATTTTTTAG TGAGGATGGTAGAATGGAACGTTCGAATTTCTTAGAGACATGGAGGTCCCTTCCTGATTCAAATGAGATTTCCAAGGACTTCCCAACCATCGTGCTTAGC AGTGCTGAAGCAACACTGGACCGGCTTGCTGCATCAAACATGTTCTTTATTGCAAAGCGCAAGAATGCGAATCAGGATGTGTTTTACTTCTCAGCTAAAC TCCCTCGAGGGATACCATTCTTGATTGAACTTACCACTGTGATTGGGAACCCTGGTGTGAAGTGTGCAATCAAGACTCCAAACCCTGAAATGTCTGCACT TTTCTTCGAAGCCATTGAGACTCTTCTCCTGGGTTAAAATGATATCTAAAATTACTTGTCTTCTATAATTTTTGTTTATATATTGTCTTTGTTGGCATAA TTGATAAATATTCTGGATAGGCGTGTTGTATCTTATTTGGAAAAAAAAATCCCATTGATTATCTATCATATGCCCTTGTCAGCTATATTTCAATTTCACT GCTACTGCCATTTTGGCCTTCATTGAAACCCTGCAATATAATAGTGTCCTGATTACATTGATGCTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_74025; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_134618
| Blastp | Beta-adaptin-like protein C from Arabidopsis with 86.3% of identity |
|---|---|
| Blastx | Beta-adaptin-like protein C from Arabidopsis with 85.86% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096) |
| Kegg | Link to kegg annotations (AT4G23460) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444618.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |