| Id Trinity | FTRINITY_DN58085_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_134648 |
| Sequence | ATTTTATATACGGTTATTTTATCATTTACAATTTTTTAAGTATTATTAACTCTTAATAATAAAAATCAATGATAGATAATCCTCGTGAATGAAAAAAATA TATACCTGTGAATGTCCCGGCTCGGACGGACATAGTACCTCCTGCTACTAAAACGACGGCGTTGATGAAACAGCGATTTAGTTATCTTCCTTCTCAATTC TCATTATTCAATTTGTTTGGGAAAGTGAGAGAAGATGAGTCGAAACGATTCCAAGTATTTCTCTACCACCAAGAAAGGTGAAATCCCTGAGCTCAAAGAA GAACTCAATTCTCAATACAAGGACAAAAGAAAAGATGCTGTGAAAAAGGTTATTGCTGCAATGACTGTTGGGAAGGATGTCTCATCGTTGTTCACAGACG TGGTGAACTGCATGCAAACAGAAAATTTGGAACTTAAAAAGCTAGTCTACTTATATCTGATAAATTATGCAAAGAGCCAACCTGACCTAGCAATACTTGC AGTAAATACATTTGTGAAGGATTCACAAGATCCAAATCCTTTGATTCGTGCCTTAGCTGTGAGGACAATGGGATGCATTCGCGTTGATAAAATTACTGAA TATCTATGTGATCCCCTTCAAAGATGCCTAAAGGATGATGATCCATATGTTCGTAAGACAGCTGCCATTTGTGTTGCCAAACTTTATGACATAAATGCTG AGTTAGTTGAGGACAGGGGCTTTTTGGAATCCCTGAAGGATCTGATATCAGATAATAATCCAATGGTTGTAGCTAATGCAGTAGCAGCGCTTGCTGAAAT TCAGGAAAATAGTACTAGACCCATTTTTGAGATCACAGTTCCCACATTGTCAAAGCTCCTTACCGCTTTAAATGAATGTACAGAATGGGGTCAAGTTTTT ATATTGGACGCTCTTTCAAGATACAAGGCAGCTGATGCCCGCGAAGCAGAAAACATAGTAGAAAGAGTTACTCCACGGTTACAACATGCAAATTGCGCAG TTGTTCTGTCAGCTGTTAAGATGATCCTTCAACAAATGGAGCTGATCACCAGTACTGATGTGGTTCGGAATCTTTTCAAAAAGATGGCCCCTCCTCTTGT TACATTACTCTCTGCAGAACCTGAGATACAATATGTAGCACTGCGGAATATCAATCTTATAGTACAAAGAAGACCAACAATTCTTGCTCATGAAATTAAG GTGTTCTTCTGTAAGTACAATGATCCTATCTATGTGAAAATGGAAAAATTGGAGATTATGATAAAACTTGCTTCAGACCGAAATATAGACCAGGTTTTGT TGGAATTTAAAGAGTATGCCACTGAAGTTGATGTAGATTTTGTTAGAAAGGCTGTTCGTGCAATTGGTCGTTGTGCTATCAAATTAGAGAGAGCAGCTGA GCGTTGCATTAGTGTTTTGCTCGAGTTGATCAAGATAAAAGTAAATTACGTGGTTCAAGAGGCAATCATTGTTATCAAAGATATATTTAGAAGATATCCT AACACATATGAGTCCATAATTGCTACACTTTGTGAGAACTTAGACACCTTGGATGAGCCGGAAGCCAAGGCATCAATGATCTGGATTATTGGTGAATATG CGGAAAGAATTGACAATGCTGATGAACTTCTCGAAAGTTTCTTGGAAAGTTTCCCCGAAGAACCTGCGCAAGTCCAACTACAATTGCTGACTGCTACTGT CAAACTTTTCCTCAAGAAGCCAACTGAGGGACCACAGCAGATGATTCAGGTTGTTTTGAACAATGCCACTGTGGAGACAGATAATCCTGATTTGCGAGAT CGTGCATACATATATTGGCGTCTCCTTTCAACTGATCCTGAGGTTTGATTTCTTGCATTTGAATCCAATCTCTTATATTTGGACTTTTGTCTACATGAGG TCAATTGGTTTATCTGCATAACCAACAGAAGATTGGATAAATATTGACTCTGTTGAGGATCGATTAATTTCTTTTTGTCATTCTGTGAAAATAGTAGCAC ACAATTAGGGTTGGCCTTTAAATCATTAATTGATAGTCTTCGTCTAACCACATGCAAAAAGTAGGTGTTTTCTCAGTTCCTCCTGAAAATTTCCATGGAT AAGGATAACCAGTATTGCTGTACATGCAATGTATCTATTTTGTTTTGCTCAGGCAGCTAAGGATGTTGTGTTAGCTGAGAAGCCTGTTATAACTGATGAC TCAAATCAGCTTGAACCTTCTCTACTTGATGAGCTTCTTGCCAATATTGCTACATTATCTTCTGTTTATCACAAGCCCCCAGAAGCTTTTGTAACTCGTG TACTCTCTTCAGCTCAGAGAACTGAAGAAGAAGACTATCCCGAGGGAAGTGAAACAGGGTATTCTGAATCATCTGCAAATCCTACAAATGGTATTGCATC ACCGCCTGCTACCAGGCAATCAGCACTTGCATCTGCAACAGCAGCACCAGCTACACCTCCATCTGTTGTACCTGTGCCAGATTTACTTGGCGATTTAATC GGCATGGATAATAATTCAATTGTTCCTCTGGATCAGCCAGTTACTCCTACTGGGCCTCCATTGCCTATTTTAGTACCTGCTTCAACTGGTCAGGGTTTAC AAATCAGTGCACAAGTGGTTAGACGGGATGGTCAAATATTTTACAGTTTGTTGTTTGAGAACTCCACTCAGGTTCCACTTGATGGCTTTATGATTCAATT CAACAAGAACGCATTTGGTCTTGCAGCTGCTGGACCCCTACAGGTTCCACAAATACAACCTGGAACATCAGCTAGGACACTCCTTCCCATGGTCCTGTTC CAGAATCTGTCCCAAGGTCCTCCTAGCTCAGTTTTACAGGTTGCTGTGAAAAACAATCAACAGCCTGTGCTTTATTTCAATGACAAATTCTCATTGCATG TATTTTTTAGTGAGGATGGTAGAATGGAACGTTCGAATTTCTTAGAGACATGGAGGTCCCTTCCTGATTCAAATGAGATTTCCAAGGACTTCCCAACCAT CGTGCTTAGCAGTGCTGAAGCAACACTGGACCGGCTTGCTGCATCAAACATGTTCTTTATTGCAAAGCGCAAGAATGCGAATCAGGATGTGTTTTACTTC TCAGCTAAACTCCCTCGAGGGATACCATTCTTGATTGAACTTACCACTGTGATTGGGAACCCTGGTGTGAAGTGTGCAATCAAGACTCCAAACCCTGAAA TGTCTGCACTTTTCTTCGAAGCCATTGAGACTCTTCTCCTGGGTTAAAATGATATCTAAAATTACTTGTCTTCTATAATTTTTGTTTATATATTGTCTTT GTTGGCATAATTGATAAATATTCTGGATAGGCGTGTTGTATCTTATTTGGAAAAAAAAATCCCATTGATTATCTATCATATGCCCTTGTCAGCTATATTT CAATTTCACTGCTACTGCCATTTTGGCCTTCATTGAAACCCTGCAATATAATAGTGTCCTGATTACATTGATGCTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_74025; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_134648
| Blastp | Beta-adaptin-like protein C from Arabidopsis with 96.64% of identity |
|---|---|
| Blastx | Beta-adaptin-like protein C from Arabidopsis with 96.64% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096) |
| Kegg | Link to kegg annotations (AT4G23460) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423358.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |