Ll_transcript_79791

• Id Trinity: FTRINITY_DN58142_c0_g1_i1
• Name Transcript: Ll_transcript_79791
• Sequence: AAAAAAATAAGGTAATTGCAATCGTGGGCTTAGACTTGGGCTTAGCCCATTTCCCTATTGTTGCCCTAGAACCCGAAAATCCTCAACCGCCTTCAAAGAC GGTGAGCTTCACTCTCTTCCACTTTCCTCTGTTCTTCTTCCATTTCAACACTATCACAACATGGACGATAGCTTATACGACGAATTCGGCAACTACATCG GACCCGAAATTGACTCCGATATTGATTCCGATAGGGAAGAAGACAATGACGACGACGACGACCAAGACAGGCTCACCAACCACCGCGACGGCGGCGCCTC CGACGACGACGGTCCCAACAATGGCTGGATCACCACCTCCAACGACGTCGACATGGTGGACAACCAGGTCGTGCTCGCGGAGGACAAGAAGTACTACCCC ACCGCCGAAGAGGTTTATGGTGAAGACGTTGAAACCCTAGTTATGGACGAAGATGAACAATCCCTAGAGCAACCAATAATCAAACCCGTTCGGAACATCA AATTCGAAGTTGGAGTGAAAGATTCAACCGCATACGTGTCTTCTCAGTTTCTACTTGGCCTAATGTCAAACCCTACTCTGGTCAGAAACGTTGCGCTTGT TGGGAACTTGCAGCATGGAAAAACGGTGTTCATGGATATGCTTGTGGAACAAACGCATCATATGTGTACTTTTGATCCGCAGAGTGAGAAGCATATGAGG TATACTGATACTAGGATTGATGAACAAGAACGGAGGATTTCGATTAAAGCGGTTCCGATGTCTCTCGTGATGGAGGATAGTAATTCTAAGTCTTATTTAT GTAACATTATGGATACACCTGGCCATGTTAATTTCTCTGATGAAATGACGGCTGCGTTGAGGCTTGCTGATGGCGCTGTGTTGATTGTCGACGCTGCTGA AGGAGTCATGGTTAACACAGAGAGGGCGATACGCCATGCAATCCAGGAGCGACTGCCTATTGTCGTTGTCATCAATAAGGTTGACAGGCTCATAACTGAA CTTAAACTGCCTCCAAAAGATGCTTACCATAAAATAAGGCATACACTGGAAGTGATCAACAACCATATATCTGCTGCATCCTCAATTGCTGGAGATGTCC AAGTTATAGACCCAGTTGCTGGAAATGTTTGTTTTGCAAGTGGTACTGCGGGATGGTCCTTTACATTGCAATCATTTGCTAAACTATATGGGAAGATACA TGGCATTCCTCTGGAAGCTAACAAATTTGCTTCTCGTCTTTGGGGAGACTTCTATTATCATCCAGATACCAGAACCTTCAAAAAGAAACCTGCTGCCAGT GGAGGAGAACGATCTTTTGTTGAGTTTGTGCTGGAACCACTCTACAAGATATATAGCCAAGTCATTGGGGAGCATAAGAAGAGTGTAGAAACAACTCTTG CAGAACTTGGAGTCACCCTCAGTAATGCAGCTTATAGATTGAATGTTAGACCTTTGCTAAGGTTGGCTTGCAGCTCAGTTTTTGGTGGAGCTTCAGGTTT CACCGATATGCTTGTTCAGCATATTCCTTCACCAAGAGATGCTGCAATTAAGAAAGTTGACCACATATATACTGGGCCCAAAGACTCAACCATCTACAAA GCCATGTCTCAGTGTGATTCTTTTGGGCCCTTAATGGTTAATGTGACCAAATTGTACCCAAAATCTGATTGCAGTGTGTTTGATGTTTTTGGTAGAGTGT ATAGTGGCAAGATACAGACAGGACAGACGGTACGTGTTCTAGGAGAAGGGTATTCGCCGGATGATGAGGAGGACATGACTGTAAAAGAAGTGACAAAGTT GTGGGTGTATCAAGCTAGAGATAGGATGCCAATAGCTGAGGCTCCTCCTGGTTCTTGGGTTCTCATTGAAGGTGTAGATGCTTCCATCATGAAAACTGCC ACTATCTGTAATGTGGATTATGATGAGGATGTATATATATTCCGGCCTCTTCAATTCAATACTCTGTCAGTGGTAAAAACAGCTACCGAGCCATTAAATC CAAGTGAGTTGCCAAAAATGGTAGAGGGATTGAGGAAGATAAGCAAGAGTTATCCTCTGGCAGTTACTAAAGTTGAGGAGTCTGGGGAACACACTATATT GGGGACTGGTGAATTGTACTTGGATTCAATTATGAAGGATCTTAGAGAGCTCTATTCTGAAGTTGAAGTCAAGGTGGCTGATCCTGTTGTCTCGTTTTGT GAAACTGTTGTTGAATCTTCATCAATGAAATGTTTTGCCGAGACACCAAACAAGAAGAATAAAATAACTATGATTGCCGAGCCACTAGAAAGAGGTCTTG CTGAGGACATAGAGAATGGTGTTGTTAGCACTGACTGGAATAGAAAGAAACTTGGTGAATTTTTTCAGACCAAGTATGACTGGGATCTCCTTGCTGCACG GTCAATCTGGGCATTTGGCCCTGATAAGCAGGGGCCAAATATTCTGTTAGATGACACCCTTCCCACTGAAGTTGACAAGAACCTTTTGAATGCTGTAAAG GATTCCATTGTTCAGGGATTTCAGTGGGGTGCACGAGAGGGACCTCTATGTGATGAACCCATCAGAAATGTTAAGTTCAAGATTGTTGATGCAAGAATTG CCCCTGAACCACTTCATCGGGGATCCGGCCAGATCATTCCAACAGCACGACGGGTGGCCTACTCTTCTTTCCTTATGGCTACCCCCAGGCTTATGGAACC AGTATATTATGTAGAGATACAAACGCCTATAGACTGTGTATCTGCAATATACACTGTGCTATCTCGTAGACGTGGACATGTTACTGCTGATGTTCCTCAA CCAGGCACGCCAGCTTATATTGTTAAGGCATTTTTGCCCGTGATAGAATCTTTTGGTTTTGAGACAGACTTGAGATACCATACCCAAGGTCAAGCATTTT GCCTCTCAGTTTTTGATCATTGGGCTATTGTTCCTGGAGATCCTCTGGACAAAAATATTGTTTTACGGCCCCTTGAACCAGCACCAATCCAGCATCTTGC TCGTGAGTTTATGGTGAAAACAAGACGTAGAAAGGGAATGAGTGAAGATGTAAGCATAGGTAAGTTCTTCGATGAGGCTATGATGGTGGAACTGGCACAG CAGGCAGCAGATCTTCATCAACAAATGATGTGAAGTTTGGTCATTTCCTATGCATATCAATTTGATCATGTTGTATTCTTCCGAAGCTTGGTCCCTTGAG CTGTTCCACTATGAAACTAGAAACAAGTAATGTGATGCAAGCAAAAATTAGAAGTTCATTGCTCTGCGAGTTGCCATGGATTTGACATTTCAATTTGACG ATCTGGTGTTAACTCATATTAGAGACATCTTGTGCTTCTATAGTGGAACGTACCAGTAAGGAATGAGGTATGTACCACTTAAGCAGAAAAATGTACCAGT AACAGCAGTTCTTGTTGAACTTTCATGGAATGAAATCATTAAGGAATGAGGCATGCAGCAAAATATTAGAGACATCTTGTGCTTCTATAGTTGACAGAGA AATGCCTCTACAATGAGGATTAATTAAACATTTATTTTTTCATTGGTTAAACTTCAAATCAATGTAAATTAAGAGTCCAATGATGTGTGCACAAATCATA TTTTCTACATGTCCATTAATATTTCCTCCCAACCAGTTTAACTCAATGGGATAAATAATTATATGATAGTTACACTTCTATGATAA
• Tissue: flowers
• Gene name: LI_gene_74574;
• Additional information: details;

Expression of Ll_transcript_79791

FPKM

• FPAB: 5.8
• FPNAB: 10.7
• LF1: 9.7
• LF2: 9
• LF3: 8
• LF4: 8.2
• UF1: 8
• UF2: 8.3
• UF3: 8.6
• UF4: 7.4

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_79791

• Blastp: 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 85.86% of identity
• Blastx: 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 85.86% of identity
• Eggnog: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity)(COG0480)
• Kegg: Link to kegg annotations (AT1G06220)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441022.1)
• Pfam: 116 kDa U5 small nuclear ribonucleoprotein component N-terminus (PF16004.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;