Ll_transcript_79794

• Id Trinity: FTRINITY_DN58142_c0_g1_i4
• Name Transcript: Ll_transcript_79794
• Sequence: CCGCGTTAAAAGTTCAAACGACGGTGAACCTCATTTTCTGAACTCCCATACTCTGCTCTTCTCTTCACACAACTCACTCGCCATGGATGATAGCTTGTAC GACGAGTTCGGTAACTACATCGGACCAGAAATTGACTCCGATTTTGACTCCGACAGAGAAGAAGACAATGACGACGACGGCGAAGATACCAGAGATAGAC TCACCAACAACCACGACGGCGCCGCCTCCGACGGTGAGGGCCCCGCCAACGGCTGGATCACAACCTCAAATGACATCGACATGGTGGACAACCAGGTCGT ACTTGCAGAAGACAAGAAGTACTATCCCACCGCGGAAGAGGTTTACGGCGAAGACGTTGAAACCCTAGTTATGGACGAAGATGAACAATCCCTAGAGCAA CCAATTATCAAACCCGTTAGGAACATCAAATTCGAAGTTGGAGTGAAAGATTCATCGACCTATGTATCTTCTCAGTTTCTACTTGGTCTCATGTCAAACC CTACTTTGGTGAGGAACGTTGCGCTTGTTGGGAACTTGCAGCATGGGAAGACGATGTTCATGGATATGCTGGTTGAGCAGACGCATCGTATGTGTACGTT TGATCCGCAGAGTGAGAAGCATATGAGGTATACTGATACAAGGGTTGATGAACAGGAGAGGCGGATTTCGATTAAGGCGGTTCCGATGTCGCTTGTGATG GAAGACAGTAATTCTAAGTCTTATTTGTGTAACATTATGGATACACCAGGTCATGTCAATTTCTCCGATGAAATGACCGCGGCTTTGAGGCTTGCTGATG GTGCTGTGTTGATTGTGGATGCTGCTGAAGGAGTCATGGTTAACACAGAGAGGGCAATACGCCATGCCATCCAGGAGCGACTGCCTATTGTTGTTGTAAT GAATAAGGTTGACAGGCTTATAACTGAACTTAAATTACCTCCTAAAGATGCTTACCATAAAATAAGGCATACATTGGAAGTGATCAATAACCATATATCT GCTGCCTCTTCAATTGCTGGTGATGTCCAAGTTATAGACCCAGTTGCTGGAAATGTTTGTTTTGCAAGTGGTACTGCAGGATGGTCCTTTACATTACAAT CATTTGCTAAACTATATGGGAAGATACATGGCATTCCGTTGGAAGCTAATAAATTTGCTTCTCGTTTGTGGGGAGACTTCTATTATCATCCAGATACTAG AACCTTCAAAAAGAAACCCCCTGCCAGTGGAGCTGAGCGATCTTTTGTTGAGTTTGTGTTGGAACCACTCTACAAGATATATAGCCAAGTTATTGGGGAA CATAAGAAGAGTTTAGAGACAACTCTTGCAGAACTTGGAGTCACTCTAAGTAATGCAGCCTATAGATTAAATGTTAGACCTTTGCTAAGGCTGGCTTGTA GCTCAATATTTGGTGCAGCTTCAGGTTTCACTGATATGCTTGTTCAGCATATACCTTCCCCAAGAGATGCTGCAATTAAGAAAGTTGATCACATATACAC CGGCCCTAAAGATTCGGTCATTTACAAAGCCATGTCACAGTGCGATTCTTCTGGGCCCTTAATGGTTAACGTAACCAAACTGTATCCAAAATCGGATTGC AGCGTGTTTGATGTTTTTGGTAGAGTGTATAGTGGCAAGATACAGACAGGACAGACTGTACGTGTTCTAGGAGAAGGATACTCGCCAGATGACGAGGAGG ACATGACTGTAAAAGAAGTGACAAAGTTATGGGTGTATCAAGCTAGAGATAGGATGCCAATAGCTGAGGCTCCTCCTGGTTCTTGGGTTCTAATTGAAGG TGTTGATGCCTCGATCATGAAAACTGCCACTCTTTGTAATGTGGATTATGATGAGGATGTATATATATTCCGACCTCTTCAGTTCAATACTCTGTCAGTG GTAAAAACAGCTACCGAGCCATTAAATCCAAGTGAGTTGCCAAAAATGGTGGAGGGCCTAAGGAAAATCAGCAAAAGTTATCCTCTTGCAGTTACTAAAG TTGAGGAGTCTGGGGAACACACTATATTAGGGACTGGTGAACTGTACTTGGATTCAATTATGAAGGACCTTAGAGAGCTGTATTCTGAGGTTGAAGTCAA GGTGGCTGATCCTGTTGTTTCGTTTTGTGAAACTGTTGTCGAGTCTTCATCAATGAAATGTTTTGCTGAGACACCAAACAAGAAGAATAAAATAACCATG ATTGCTGAGCCACTAGAAAGAGGTCTTGCTGAGGACATAGAGAATGGTGTTGTTAGCACTGACTGGAATAGAAAGAAACTTGGTGAATTTTTCCAGACTA AGTATGACTGGGATCTCCTTGCTGCACGGTCAATCTGGGCATTTGGCCCTGATAAGCAGGGCCCCAATATTCTGTTAGATGACACCCTTCCCACTGAAGT TGACAAGAACCTGCTGAATGCTGTAAAAGATTCCATTGTTCAGGGATTTCAGTGGGGTGCACGAGAGGGACCTCTCTGTGATGAGCCCATCAGAAACGTT AAGTTCAAGATTGTTGATGCAAAGATAGCCCCTGAACCACTTCATCGGGGATCCGGCCAGATCATTCCAACAGCACGACGAGTGGCCTATTCTTCTTTCC TTATGGCTACCCCTCGGCTTATGGAACCTGTATATTATGTGGAGATTCAAACACCCATAGACTGTGTATCTGCAATATACACTGTGCTATCTCGTAGACG TGGACATGTTACTGCTGATGTTCCTCAACCTGGCACTCCTGCTTATATTGTTAAGGCATTTTTGCCCGTGATAGAATCTTTTGGTTTTGAGACAGACTTG AGATACCATACCCAAGGTCAAGCGTTTTGCCTATCAATTTTTGATCATTGGGCTATTGTTCCCGGAGATCCCCTGGACAAAAGTATTGTTTTGCGCCCAC TTGAACCAGCGCCAATTCAGCATCTTGCTCGTGAGTTTATGGTAAAAACAAGGCGTAGAAAGGGAATGAGTGAAGACGTAAGCATAGGTAAATTCTTCGA TGAGGCTATGATGGTGGAACTGGCACAGCAGGCAGCAGATCTTCATCAACAAATGATGTGATTCTTTAAAAAAAGCTTCTATGTCAATTTGACCATTTTG TATTTTTCTGAAGTTTCCTTGGGCTGTTCCATTACGAAACTGGAAACAAGTTATGTGATGCAAGAAAAATCTGGAAGTTCTTTGCTTTGTGAGTTGGCTA GGGTATGTCATTTCAATTCCAGGTACTGGTGTTAGCACCTACGCCCTTAGAAGTAGTCTCCTATCTCCAAAGTGAAAAAAGTTTTTTCTCCACAGTGGAG CATCTTTGTTTGTAGACTGTACTTTATGCATTGCTAGAATCTATTGTAGTGTTATTACAAACCATGTCTGGAGAAAATTTCTATTGTTTACCAAAATGTG GGTGTCTCCAATTTAATATTTACCAAGATATTATCTAGTCCTGTAAAAGTGGATTGAAGACTTTGTTATACGTTTGGGTCAGCATTTGATTACAAAGATT CTCATTTTATGGAAATGTATCCCATTTTCAATGTTAATCAAGGTTCTCCTTCGTCAGAGTAAAAAGTCATTTTGGATCGAAGATTGATGGCTTCAAGTTT TTTCCTTCCCTCTATTGTCC
• Tissue: flowers
• Gene name: LI_gene_74574;
• Additional information: details;

Expression of Ll_transcript_79794

FPKM

• FPAB: 9.3
• FPNAB: 13.1
• LF1: 9.4
• LF2: 8.9
• LF3: 10.1
• LF4: 10.4
• UF1: 8.6
• UF2: 8.3
• UF3: 10.2
• UF4: 9.8

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_79794

• Blastp: 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 84.45% of identity
• Blastx: 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 85.28% of identity
• Eggnog: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity)(COG0480)
• Kegg: Link to kegg annotations (AT1G06220)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019463083.1)
• Pfam: 116 kDa U5 small nuclear ribonucleoprotein component N-terminus (PF16004.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;