| Id Trinity | FTRINITY_DN58142_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_79797 |
| Sequence | CCGCGTTAAAAGTTCAAACGACGGTGAACCTCATTTTCTGAACTCCCATACTCTGCTCTTCTCTTCACACAACTCACTCGCCATGGATGATAGCTTGTAC GACGAGTTCGGTAACTACATCGGACCAGAAATTGACTCCGATTTTGACTCCGACAGAGAAGAAGACAATGACGACGACGGCGAAGATACCAGAGATAGAC TCACCAACAACCACGACGGCGCCGCCTCCGACGGTGAGGGCCCCGCCAACGGCTGGATCACAACCTCAAATGACATCGACATGGTGGACAACCAGGTCGT ACTTGCAGAAGACAAGAAGTACTATCCCACCGCGGAAGAGGTTTACGGCGAAGACGTTGAAACCCTAGTTATGGACGAAGATGAACAATCCCTAGAGCAA CCAATTATCAAACCCGTTAGGAACATCAAATTCGAAGTTGGAGTGAAAGATTCATCGACCTATGTATCTTCTCAGTTTCTACTTGGTCTCATGTCAAACC CTACTTTGGTGAGGAACGTTGCGCTTGTTGGGAACTTGCAGCATGGGAAGACGATGTTCATGGATATGCTGGTTGAGCAGACGCATCGTATGTGTACGTT TGATCCGCAGAGTGAGAAGCATATGAGGTATACTGATACAAGGGTTGATGAACAGGAGAGGCGGATTTCGATTAAGGCGGTTCCGATGTCGCTTGTGATG GAAGACAGTAATTCTAAGTCTTATTTGTGTAACATTATGGATACACCAGGTCATGTCAATTTCTCCGATGAAATGACCGCGGCTTTGAGGCTTGCTGATG GTGCTGTGTTGATTGTGGATGCTGCTGAAGGAGTCATGGTAAACTCTACTGTTCTTATCGTTTCATGGAGTTCAACTGTTAATAGTTGTTACTCGCCATT GTTAATTTGCTGTCATTCCTTTCTCAATTTGCTCTCTCATTCTCCCGTTCTTTTTTCAACATAGTCCCTAGACTCTGTTCCGCTCTCTCCACCTTGTAAT CTTCGCTAACGTGTAAGGAGAGACTGGCACAACAAGAAAGAGACAGGTGATACATGAATCTGATATGTAGATTATCAAAGTTAGTTATATTTTTTTGGGC A BLAST |
| Tissue | flowers |
| Gene name | LI_gene_74574; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_79797
| Blastp | 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 74.44% of identity |
|---|---|
| Blastx | 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 77.25% of identity |
| Eggnog | Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity)(COG0480) |
| Kegg | Link to kegg annotations (AT1G06220) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463083.1) |
| Pfam | 116 kDa U5 small nuclear ribonucleoprotein component N-terminus (PF16004.4) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |