Id Trinity | FTRINITY_DN58171_c5_g1_i15 |
---|---|
Name Transcript | Ll_transcript_79346 |
Sequence | ACCAGTGCCACTCAAAACCCTCAGACACTCAACCAGTGCCACTCAAAACCCTCAGACACTCAACCAGTGCCACTCAAAACCCTCAAACACTCAACCAGTG CCACACTTTGGTAAAGAAACGAAGGTTGGGATTTTGGAATTGTAGCAATGTCTGATCCATACGCACGAGCGAAAGGAGGAAGGTTGAGACTTAGCCAAAC GCAGTAAAACCATCGACAAGAAGAGAAAGAAAAATAAGAACAAGAATGACAATAATACCCTTAACCCTAACCAAGATCCCAAAATTGAAACCACATCCAA ACCCTAGACGGTGAAGAACAATTGAAACCAGGTGCGGTGGTGTACACAATAGGCGCGACGAAGAGGATGAAGTATGAAGAGTTGTTTCCTGTTGAAGTTA AGAAATTTGGTTACGAACCTAAAAAAGTACCAAATTCAACTTCGTTGAGGATGCTCTTGATCTTGTGTTAAGAAGAAAGCTTATCGTTACTTTAAATGAT TTATTACATCGTCACTGTTGAATTTTGTAAGTTGTATTCTTCTATTATTTGCTTTTGTTCTTGGTTGAGGCAGGATCTAGAATGCTACCAGACAGTCATA ATGGATTGGAAAATCCATTTATTCCTTCATGTCACAGTTCAATGGTGATGTTCAAGGCACATCACACACTGCTGGCTGTAGCAAGGAAATTTCTGAAGAT ATTCTTACACCAGCCAATGCCATCAGAGCAGAAAGCAAACAAATTGCATCACCGCATATCAATGTGGAAGAAAAGGGTCCTCGTGGGGAAGAGGAAAATA TATCTGCTAAAACACTTGGGGATAATGGAACCTCACCAAACAAAGAACTCTCTGAGCCTGTGGTAGAATCTGCTGCTGTTTCTACGCAATTGAAGGAGAA TGACAACCCTGATTACGGAAGCAGCCATGATATTGATCTGACTAAAACGCCACAACAAAAACCAAAGAGGAGAAGAAAGCACCGCCCCAAGGTCATCATA GAAGGCAAACCCAAAAGAACACGGAAGCCAGCTACCCAAAAGCCAGCTCAAGCAAAAGAAACCCCAACTGTCAAGAGGAAGTATGTTCGAAAGAAAGGAT TGAACAACACATCTATTCCTCCAACAGAAATGATGGGAGAATTGACTGAAGAAATTAATCCAGAATCTGCTAAACAACCTTGTAGAAGGTCATTAAATTT TGATATAGGACCAATAGATGAAAGTTCTGCATGCAGAGAAAATGAAACTGCACATCTGGGCAAAGAAACTGGCGTAGTTGAACAGCAAACAAATGTAGGC CTTGCCCATGATCTAAGTACAACTACATCTCCTTCAAAAGAAAACCCACCTGAGAAGAGGAAGTATGTGAGAAGGAAAAAAATGAGCAAAACTTCTGCTC CTACAATCGAAGTGACAGGAGAATTGCCTAAAGGGGTGATGGCAGAATCTACCAAAAATTCTTGTGGAAAGTCCTTAGACATTGGCATAGGAGCTACCGA TCAAAGTTTGGCAGGCATAGAAAATGCAACTGTGCATCTGGGCAATGAAATTGATGTAGCCACACAGGAAACAAATGTAGGCCTTTCCTATGATTTGAAG ACTTCCACTGAGAAGGCATCAAATAATTATATGCCATTATCTAAAGACACACAAGCCCCTGGGACATCTTCTTCAAAAAGTACTCCCCCTGCGGCAGAGG TAAAAGTAGACACAACTACCAAGAGGAAGTATGTTAGAAGGAAAGGGCCAAATAAGTCTATCCCTCCAGCAGAAATGGCAGCAGCATTGACTGAACCAGT GGTGCTCGATTCTAACAATATGTCATGGAGAAGTTCTTCAGGCGGACAAAACTTAAGTGAGCATATTAGCATGGACAATAATTCTAAGAAGGAATTAGAT AGCTCCATGTCATTGCCTGAAGACATACAAGCCCCAAGAACATGTCCTGCAAAAACCAATTCCTCTGTGGCAAAGTCAGAAGAAAAGGCAGCTAGCAAGA GGAAGTATTCGAGAAGGAAAAGATTGAGCAACTCTTCTACTCATCCAACTGAAATGACAACAAATTTGATTCAACCAACAATGCTGGAATCTACTGAAAT AGAACAGAGAAGGTCCTTGTATTTTGACGCAGGAGCAAGAGATGAAAGTTCTGCATGCAGACAAAATTTAAATGTGCATAATTGCAAGGAAAACAGTGCG GTGGCAGAGGGAACACATGCAGGCCTTACCTATGATCAAGGCACTTATATGAAGCAGGCATTATATAATTTCATGTCATTACCTGAAGACATACAAGTCT CAAATACATCTTCAAAAAGCAACTCCCCTGGGGCAAAGCTGAATGCCAACTCTGTAGAAAACAGAAGCAGAAAAAATGGTCAGGGAATTGTTGAGGATGG ACATGAAAACAGTGCAAAACTCCTACTAAAATCAGTGAGAGAATCAAATCCAAATGATTCCAATATCAGTAACAGTCAAATCTCAATGCGGTTACAAATG GTTGGTTCCAAGAGAAGTCATTGTGATACCAGTAGATTTGCAAACGCGAGCAGCATGAATGACATTGGGGCATACTATAATGGATTTCCATCATACCAGA ATATGTTTAGCATTCAGTTTCCCAACCTTCAGAAGAGACGGAGAAGTGAAAACGGGAAAAGTTCTAATGCTTATACTACATCTTCTGTGACTACCATCAA AGAAGCAGAACTGACATTCTCTCAAGAAGTTGCTCAGGTGCATCCTTATGCATCAAGTTCTAGCTGCTGGAATTTTTGTTCCGAATATAATGCAGCTAGA GTCCCAACCATAAGTGAAGCAACAGGAAGCGTTATTGATGATGATCAAGCATTCGAAGAGTTCAAATTATCTTTGAGAAGAGCACAAATTTATGATTGTG TATCTCTAACCAGAATTAGAAACTTTGATAGTGAACCAAATTATTCTGGACATGAACTATGCTTTTCTGATAGACAAGCATTTGGGAATGCACAAGGACT ACAGACATCCATTGATGCCTTAGTTACTGAGACAAGGGCATCACTCACAAAGAATAAAAATAAAAGTGTTGTTTCCAGGTCACCATATTCTACAATAAAC GAAATGCAACAGTGTCAGAGTTTTGCATTGGGAAATTACCACCAGCCAATAGCTGTTGCTTCTGAAGTAAGGCCAATCATGCTATATGTTAATGCATTAG CAGAGAAACTTAGTCAACTAAACATAAACAAAGGAGCCAAAGACCTTGCCCTTGTCCCATATAAAAAAAAGAAAAAGAAAAGAAGTCTTGTCAATGGAGA TGGCACCATTATTCCCTTTAATGGATCATTTAGTCCTATCAGAAAACAGCTTCCACGACCTAAAGTTGACATTGATGAGGAGACTGATAGAGTTTGGAAG CTTTTGATGTTGGATATTAATAGTCATGGCATTGATGGAACAGATGAAGATAAGGCCAAGTGGTGGGAAGACGAACGAAACATTTTCCGTGGGCGAGCAG ATTCATTTATTGCAAGGATGCATCTTGTACAAGGAGACAGACGATTTACTCGATGGAAAGGATCAGTTCTGGATTCAGTGGTAGGAGTTTTCCTCACACA AAATGTATCAGACCATCTTTCCAGTTCTGCATTCATGTCCCTTGCTGCTCGATATCCGAAAAAGTTTAGCGAAACATACCATGGAGAAGGGACAGTGGTA GCCAACGAACCAGAAGTTCACATAGTAGAACCAGAAGAGAGTACAGAATGGGATAGCCAGATATTGGACAAATCTGTTTATGACCACAGTTCTATGACAA TAGACATTTCTGAGCATTCTGGAGAAAAAGCTGACAACAGTTCCAGCAGAACTACCAATGGTGCAATTAGCATAACATATGAATCAAGCTGCAAACTGTC AGAATCATCTGAAAGAAATACAGGGAAACAGTATAGTCCAATTAGGAGTGGACCAATTAGTACCATGTCTGAGGAAGGGGAGGAAAAATCATGTTATGAG GGTGTTAGGAAAGAGTTAAATGACATAGTTTCATCCCAAGACTCTGTCATTTCATCTCAAATATCTGGCGATTCTTCAAATGATCAAAATCCTGAGAAGA TAGGGTCATGCTCGGATAGCAACTCAGAAGTAGAAAACCTCTCAAGCACAGCAAAGCACACCAGTTTTTATAACAGTACTTCCTTTAGCAAGCTTGTCGA AATGGCAAGTTCATCCAAGTTATATGAAGTGAACAGTAAAAAATGTAACTCAACTGAGAACTTAAGAGATGCATTTGGCCTTGGCATGATGCACGACCAC TCAGCAGAAACCTTGGAAAAATCAAATCTTATCGAAGGCTCCCTTGAAGCATCCATCACCACATCCCATCCCATACAAAAAGACACCTCAAGGAATGAAA TCAATGAGATAAGTTCTGCTCCAGTACAATTACAGAGCCGAGGACAAGCAAAGGATAAAAATGAAGAGATTAACTGGGATAACTTAAGAATACAAGCACA AGCTAAGGCAGGGAAAAGAGAAAAGACAAAAGATACTATGGATTCTTTGGACTGGGAAGCTGTTAGATGTGCGGATGTCAATGAGATTGCCAATACAATA AAAGAACGTGGAATGAACAATAGACTCGCAGATCGCATTAAGAATTTCCTGAACCGACTGGTTGAAGAGCATGGAGACATTGACCTGGAGTGGTTGAGAG ATGTTCCACCAGACCAAGCAAAAGAATACTTGCTCAGCGTAAAAGGATTGGGATTGAAGAGTGTGGAATGTGTGCGGCTTTTAACACTGCACCATCTTGC CTTTCCGGTGGATACAAATGTTGGACGTATAGCAGTACGATTGGGATGGGTACCTATCCAGCCATTGCCTGAGTCATTACAGTTGCATCTCCTAGAACTG TACCCAATATTGGAGTCCATACAAAAATACCTCTGGCCTCGACTCTGCAAGCTGGATCAAAAAACATTATATGAGTTACATTATCAGATGATAACATTTG GAAAGGTCTTCTGTACAAAAAGCAAGCCAAATTGTAATGCATGCCCAATGAGAGCAGAATGTAGACACTTTGCTAGTGCATTTGCAAGTGCAAGGCTTGC TCTTCCAGGACCAGAGCAAAAGAGTATAGTTAGCACATCTGCAAATAATGTCAATGATCAGAACCCACCTGTAATCTTCAATCAGTTGTACTTGCAACCC GCCGAGAACACAAACCAAGCAGAAGACATTCAACAAACAGAACTGAGCAGACAACTGTATTCAAAACCTGAAATAAATAGTTGTCAACCAATTATTGAAG AGCCAACAACTCCAGATCCAGAATGCTCGCAACTACCACAAGATGATATTGAGGATGCATTCTATTATGATGATTCATGTGAAATTCCCACAATCAAACT TAACATGGAAGAATTCACTACGAATCTACAAAATTATATGCAACAAAACATGGCACTACAAGAAGGTGAAATGTCAAAGGCCTTGGTTTCTTTGAATCCA GAGGCTGCTTCCATTCCTGTGCCCAAGCTAAAGAATGTGAGCCGATTAAGAACAGAGCATTGCGTTTATGAACTCCCAGATACGCATCCTCTTCTGGAAG GGTGGGACACTCGAGAGCCCGATGATCCAGGAAAATACCTTCTTGCTATATGGACTCCAGGTGAGACGGCAGATTCTATTCAGCCACCTGGAAGCAAATG CAACTCTCTGGAATGTGGCCAACTCTGCAACGAGAAGGAGTGTTTCTCATGCAACAGTTTCCGAGAAGCAAATTCACAAACAGTTAGAGGGACAATCTTG ATACCATGTAGAACAGCGATGCGTGGAAGCTTTCCACTAAATGGGACCTATTTCCAAGTCAATGAGGTATTTGCCGACCATGACTCAAGTCTTGACCCAA TTAGTGTTCCGCGAAGTTGGATCTGGAATCTTAATAGGAGAACGGTATATTTCGGAACCTCCATACCAACAATATTTAAAGGTTTATCCACACAGGATAT TCAACAATGCTTTTGGAGAGGGTATGTCTGTGTGAGGGGGTTTGACAAGAAAACACGAGCACCCCGTCCTCTTATG BLAST |
Tissue | flowers |
Gene name | LI_gene_74785; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_79346
Blastp | Protein ROS1 from Arabidopsis with 47.73% of identity |
---|---|
Blastx | Protein ROS1 from Arabidopsis with 67.93% of identity |
Eggnog | endonuclease III(COG0177) |
Kegg | Link to kegg annotations (AT2G36490) |
CantataDB | Link to cantataDB annotations (CNT0000689) |
Mirbase | mtr-MIR2086 (MI0010539) |
Ncbi protein | Link to NCBI protein (XP_019453313.1) |
Pfam | Permuted single zf-CXXC unit (PF15629.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |