Ll_transcript_78931

• Id Trinity: FTRINITY_DN58182_c1_g2_i11
• Name Transcript: Ll_transcript_78931
• Sequence: GTTAAATCAAAGCACCGCCATTACAAAAAAAGAGCGTAGCCATTAAAAACCCATAACACGCTTCCACGTCCTCAAAAGACCCACGTCCAAATGCATCACC AACAACACCACCCCCTCGCATAATATAATTGTCCGAACGAGGGTAATTCCGTAAACTCCATTTCATATCGTCTTCTCTTCCTTCACCGACCCGGTCCTCA ACCCGCGCTGAGTCACCACCGGTCCAAGACCAGTTCGGTTTGGTTCCGTTTCATGGAGATCGCTCACGATCACAACCAGCCACCACCGCCGCCGCTTTCC CTCGACGGAACCCCAATCCACGCTGAAACTCTCGCTAACTCTCCTTCATCGTCTTCCTCTTGCTCCTCCCCCACTTCATCTTCTTCGGAGGGAAAGGACA ACGAAGCGACCGCGTCGTCGTCGAAGGCGCCGCCGCCTGCCGCCGCAAAGTACGACGATGATGACGAGGAAGGAGATGTCTGCCGGATATGCCGAAACCC TGGGGAAGCCGATAATCCTCTGCGGTACCCTTGCGCGTGTAGCGGTAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAAC GCTCGCCAATGCGAGGTCTGCAAGCATCCATTCTCCTTCTCTCCTGTTTATGCTGATAATGCCCCATCTAGGCTACCTTTCCAAGAGTTTGTGGTTGGAA TGGCAATGAAGGCTTGTCATGTTCTGCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCCGTGTGGCTCCTAATTATTCCTTTCATAACATTTTGGATATG GCGATTAGCTTTTGTGAGGAGTTTTGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTATCAACAGCAGTTATTCTGACTGATTGCCTCCATGGTTTCCTA CTTTCTGCAAGCATCGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGACTACTTTAGGCATTTGAGAGAAATTGGGGGGCAGGATGCTGATAGAGAAG ATGAAGTAGACAGAAATGGTGCTCGAATGGCTAGAAGGCCTCCTGGACAAGCTAATCGTAATGTTGCTGGTGATGGGAATGATGAAGATGCCGCTGGGGC ACAAGGAATTGCAGGAGCAGGTCAAGTAATTAGACGTAATGCTGAAAATGTTGCTGCACGGTGGGAAATGCAAGCAGCACGTCTTGAGGCTCATGTTGAG CAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAGGATGTGCCCTTCGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAACG CATTTACTGTGTTGGCAAGCAACATGATTTTCCTTGGCGTTGTAATCTTTGTTCCCTTCTCATTAGGCCGCATCATACTTCATTATCTATCCTGGTTCTT CTCAACTGCTAGTGGCCCTGTATTGTCAGTGGTGGCCCCACTTACAGATGCATCTCTCTCCCTAGCAAATATCACGCTAAAAAATGCTTTAACATCAGTT AAAAACTTGTCATCTGATGCTCAAGAAAGTGGATCAATTGGTCAGATTGCAGAAATGCTGAAAGTGAATGCAAGTGGATCGAGTGAAATGTCAAACAACA TAAGTGCATCTGTTTCAGCTGATCTCTTGAAAGGAGGGTCAATTTCAACTTCAGGGCTTTCTGATGTTACTACTCTAGCTATTGGATATATTTTCATATT TTCTCTGATTGTCTGCTACTTTGGGGTTGTGGCTTTAATACGTTACACTAGGGGTGAGCCTTTGACTATGGGAAGGTTCTATGGTATTGCTTCCATAGCA GAGACAATTCCATCTCTCTTCAGGCAGTTTTTGGCATCAATGAAGCATTTGATGACCATGGTTAAGGTTGCCTTCCTTTTAGTTATTGAACTGGGGGTAT TTCCTTTGATGTGTGGGTGGTGGCTCGATGTTTGTACTATACAGATGTTCGGGAAGACAATGGCTCATAGAGTTCAGTTCTTCTCTGCGTCTCCTTTAGC AAGCTCATTGATTCACTGGGTTGTAGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTACTCAGAGGGGTTTTGCGTAATGGAGTTTTGTAC TTCCTTCGAGATCCTGCTGATCCAAACTACAATCCATTCCGTGATCTAATAGATGATCCTGTGCACAAGCATGCTCGCAGAGTGCTATTATCTGTTGCAG TTTATGGCAGTTTGATAGTGATGCTGGTATTTTTGCCTGTCAAACTTGGCATGAGGATGGCACCTTCCATTTTCCCACTTGACATATTGGTATCTGATCC ATTCACTGAGATTCCAGCTGACATGCTTCTCTTTCAGATCTGTATCCCATTTGCTATTGAGCATTTTAAATTGAGAACAACTATTAAATCCCTACTTCGC TATTGGTTTACAGCCGTTGGTTGGGCACTTGGTTTAACCGACTTTTTGCTGCCTAGACCTGATGACAATGGTAATCAAGAAAATGGAAACGGGGAGCCAG CTAGGCAGGAAAGGCTGCAGGTAGTACAAGCAGGAGTGCATGATCAAGGTGTAATGGCTTTTGCTGGTGATGATTTGAATAGGGTCATTAATGCAGCGGG AGAACTGAATGCTGGAGAGGATAATGACAATGACGAGCAATCTGATACTGATTATGCCTTTGTCCTTCGCATTGTTCTTTTACTGGTGCTTGCTTGGATG ACACTCCTTGTCTTCAACTCTTCCCTGATAGTTGTACCAATTTTACTTGGACGGGCACTTTTCAATTCTATTCCTCGTCTTCCCATAACTCATGGAATCA AGTGCAATGATCTGTATGCGTTCATCATTGGAAGCTACGTGATCTGGACTGCTGTTGCTGGAGTCAGATACTCAATTGAGCAAATTAGAAAAAGGAGAGC TTCAGTTTTGTTTGGCCAAATATGGAAGTGGTGTGCCATTGTTGTGAAGAGTTCTGCACTTCTGTCTATATGGATATTTGTCATCCCAGTGCTAATTGGG CTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCAGTGGATGAAAGTCCTGTATTCCTTCTTTATCAAGACTGGGCATTAGGCCTTATATTTC TCAAGATTTGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGACGAAAGTTGGCGTGCAAAATTTGAGAGGGTGAGAGAGGATGGCTTCTC CAGGCTTCAAGGTCTTTGGGTTCTTAAGGAGATTGTACTTCCAATCATAATGAAACTGTTGACAGCATTGTGTGTACCTTACGTTTTGGCCAGAGGTGTG TTTCCAGCCCTTGGGTATCCCTTGGTGGTCAATTCTGCTGTATATCGGTTTGCATGGTTGGGTTGCCTCTCTTTCAGTTTCATTTGCTTTTGTGCAAAGA GATTCCATGTGTGGTTCACAAATCTCCACAATTCAATACGCGATGATCGGTATCTGATTGGCCGGAGATTGCACAACTTTGGAGAACATGTTCAGAGGGC AATTGAGGCAGGAGCTTCTTCGGAGACGCAGGATACTTTACTAGGTACAAACTTAATCCAACAAGATCAAGAAGCAGATATTGGACTACGGTTGAGACAC ATCAATCCACAGGCGCACTGAGATATTTCAAGTAGGAGACCTAAGGTTGTTAGAGCCTTGGGCTGTCCCAGTTCATGAATCACTGATGTATACACTAAAC AACTCTGTTGGATAGTTATCACACCTCTTTTCATGACATGTACTGCAGCTAATATGAAAATGTGCATGTTACTTGCCCAATAATTTAGTAAATAGTAGGT AAACGAAAATATTGTAGAGAGAAGTGGACATCATACTCAAGTGTGGATCAAGTAGAATTGCATGTGTTGCAGAATGTACGAAAATTGTAGATGCCAGAAG TAAAACGATCCAGCACACAAATGATGTTCTCCTAGGGTCCCAACACTAACATTTTCTCCTGTCTTTGACCTATTGGACCATTAATTGGGGTTTAGTTCAC TTACACTCTAACTAAAATCAGCACAGCATGAATTCCTTGGGCATGAAACATTTGCTAGGGGTGCGAGAAGAAAAAACTAAATGCCATATTACACCATAAA ACGCAGCATATACAAAAG
• Tissue: flowers
• Gene name: LI_gene_74866;
• Additional information: details;

Expression of Ll_transcript_78931

FPKM

• FPAB: 25.9
• FPNAB: 21.7
• LF1: 18.7
• LF2: 21.1
• LF3: 21.7
• LF4: 17.4
• UF1: 14.1
• UF2: 21
• UF3: 21.9
• UF4: 19.7

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_78931

• Blastp: Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 78.16% of identity
• Blastx: Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 77.59% of identity
• Eggnog: (Membrane-Associated Ring finger (C3HC4))(COG5183)
• Kegg: Link to kegg annotations (AT4G34100)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445805.1)
• Pfam: RING-variant domain (PF12906.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;