| Id Trinity | FTRINITY_DN58182_c1_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_78924 |
| Sequence | GTTAAATCAAAGCACCGCCATTACAAAAAAAGAGCGTAGCCATTAAAAACCCATAACACGCTTCCACGTCCTCAAAAGACCCACGTCCAAATGCATCACC AACAACACCACCCCCTCGCATAATATAATTGTCCGAACGAGGGTAATTCCGTAAACTCCATTTCATATCGTCTTCTCTTCCTTCACCGACCCGGTCCTCA ACCCGCGCTGAGTCACCACCGGTCCAAGACCAGTTCGGTTTGGTTCCGTTTCATGGAGATCGCTCACGATCACAACCAGCCACCACCGCCGCCGCTTTCC CTCGACGGAACCCCAATCCACGCTGAAACTCTCGCTAACTCTCCTTCATCGTCTTCCTCTTGCTCCTCCCCCACTTCATCTTCTTCGGAGGGAAAGGACA ACGAAGCGACCGCGTCGTCGTCGAAGGCGCCGCCGCCTGCCGCCGCAAAGTACGACGATGATGACGAGGAAGGAGATGTCTGCCGGATATGCCGAAACCC TGGGGAAGCCGATAATCCTCTGCGGTACCCTTGCGCGTGTAGCGGTAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAAC GCTCGCCAATGCGAGGTCTGCAAGCATCCATTCTCCTTCTCTCCTGTTTATGCTGATAATGCCCCATCTAGGCTACCTTTCCAAGAGTTTGTGGTTGGAA TGGCAATGAAGGCTTGTCATGTTCTGCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCCTCATTATACCTTTCATAACATTCTGGATATG GCGGTTAGCTTTTGTGAGGAGTTTTGGTGAAGCCCAGAGGTTATTCCTAAGTCATTTATCAACAGCCGTTATTCTGACAGATTGCCTCCATGGTTTCTTA CTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGACTACTTTAGGCATTTGAGAGAAATTGGGGGGCAGGATGCTGATAGAGAAG ATGAGGTGGACAGAAATGGTGCTCGAATGGCTAGAAGGCCTCCTGTACAAGCTAATCGTAATATTGCTGGTGATGGGAATGGTGAAGATGCTGCTGGGGC ACAAGGAATTGCAGGAGCAGGTCAAGTAATTAGACGTAATGCGGAAAATGTTGCTGCACGGTGGGAGATGCAAGCAGCACGCCTTGAGGCTCATGTTGAG CAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAGGACGTGCCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATG CATTTACTGTGTTGGCAAGCAACATGATTTTCCTTGGCGTTGTAATCTTTGTTCCCTTCTCATTTGGCCGCATCATACTCCATTATCTATCCTGGTTCTT CTCAACTGCTGCTGGTCCTATATTGTCAGTGGTGGCCCCACTTACAGACACATCTCTTTCCCTAGCAAATATCACTTTAAAAAATGCATTAACATCTCTT AAAAACTTGTCATCTGATGCTCAAGAAAGTGGCTCAGTTGGTCAGGTTGCAGAAGTGCTGAAACTGAATGCAAGTGGATCAAGTGAAATGTCAAACAACA TTAGTGCAGTTTCAGCTGATCTCTTGAAAGAAGGGTCAATTGCAACTTCAAGGCTTTCTGATGTTACTACTCTAGCTATTGGATATATGTTCATATTTTC TCTGATTGTCTTCTACTTTGGTGTTGTTGCTTTAATTCGTTACACAAAGGGTGAACCTTTGACCATGGGAAGATTCTATGGTATTGCTTCTATTGCAGAG ACAATTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTTTTAGTCATTGAACTGGGGGTATTTC CTTTGATGTGTGGGTGGTGGCTAGATATTTGTACTATACAGATGTTTGGGAAGACAATGGCTCATAGAGTTCAGTTCTTCTCTGCGTCTCCGTTAGCAAG CTCTTTGATTCATTGGGTTGTAGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGTCTACTTAGAGGGGTTTTGCGTAATGGTGTTTTGTACTTC CTTCGAGATCCTGCTGATCCAAACTACAATCCATTCCGTGATCTGATTGACGATCCTGTGCACAAGCATGCTCGCAGAGTGCTATTATCTGTTGCAGTTT ATGGGAGTTTGATTGTGATGCTGGTATTTTTGCCTGTCAAACTTGCCATGAGGATGACACCGTCCATTTTCCCACTTGACATATCGGTATCTGATCCATT CACTGAGATTCCAGCTGACATGCTTCTCTTTCAGATCTGTATCCCATTTGCTATTGAGCATTTTAAATTGAGAACAACTATTAAATCCCTACTTCGCTAT TGGTTTACAGCCGTTGGTTGGGCACTTGGTTTAACCGAATTTTTACTGCCTAGACCTGACGAAAATGGTAATCAAGAAAACGGAAACGAGGAGCCTGTTA GGCAGGAAAGGCTGCAGGTAGTACAAGCAGGAGTGAATGATCAGGGTGTAATAGCATTTGCTGGTGATGATTTTAACAGGGTCATTAATGCAGCAGGAGA GCTGAATGTTGGAGATGATTATGACAGTGATGAGCAATCTGATTCTGATTATGCCTTTGTGCTCCGCATTGTTCTTTTATTGGTGATTGCTTGGATGACT CTCCTTGTCTTCAACTCTTCCCTGATAGTTGTCCCGATTTCACTTGGACGAGCACTTTTCAATTCTATTCCTCGTCTTCCCATAACTCATGGCATTAAGT GCAATGGTATGTAATGGATTGAACTGTTCTCTTTTGTCAGCTTGCTTCCTAACTTTGGATGTGTTTGTAATCTTTTTTCTTTTCTTAGATCTGTATGCAT TCATCATTGGAAGCTACGTGATCTGGACTGCTGTTGCTGGAGTCAGATACTCAATCGAGCAAATTAGAAATCGGAGAGCTTCAGCTTTGTTTGGCCAAAT ATGGAAGTGGTGTGCCATTGTTATGAAGAGTTCTGCACTTTTGTCTATATGGATATTCATCATTCCAGTGCTAATTGGGCTTCTCTTTGAGCTTTTGGTC ATTGTGCCAATGAGAGTTCCAGTGGATGAAAGTCCTGTATTCCTTCTTTATCAAGACTGGGCATTAGGCCTTATATTTCTCAAGATTTGGACTAGATTGG TTATGTTGGACCACATGATGCCTCTGGTGGACGAAAGTTGGCGTGCACAATTTGAGAGGGTGAGA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_74866; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_78924
| Blastp | Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 78.1% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin ligase SUD1 from Arabidopsis with 77.09% of identity |
| Eggnog | (Membrane-Associated Ring finger (C3HC4))(COG5183) |
| Kegg | Link to kegg annotations (AT4G34100) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423520.1) |
| Pfam | RING-variant domain (PF12906.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |