Id Trinity | FTRINITY_DN58388_c0_g1_i4 |
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Name Transcript | Ll_transcript_211552 |
Sequence | GAAAAGACCACAAAATCAATCACTAATGAAATTAACAAGGTTTATATCCAATTAGTTTTGTTTTGAATATCACAGGGGCTTCAGATTTAGCTTCAATTGA CACATTCTATTTAACACCTTACCAAAAATCCCTGCATGAACACATTCCATTTCTGAAATGGTGATAGCGCACACGGTCTCTCATGATAATCTCACGGCTA TAAATTTGAGAAATGAGTTTGAAAGCAGAATGGCAATCCTCACACACCCTTAGATTCTTCACAATGTGCAGAGTTGTTCCTGCTTCTGTACGTATAAGTC CAAATGCAAGTGCAAGTTTTTCACTATGCTGCTTAAGTGCTGTTTCTTTTTCTTCCTCTTCAATATCAAATGATACAATTGATGTATTTGGTGAATACCC TTTAATCTGAAGCTTCTCCATAATGCTTTCTAACATCACATATATCGATTTCATTTCGGGATGTGAACCATCTCCCATTTTAAACTCATGAACTCTGCCA TCTAAATTCATCATACTACTTCCCGGAATAGTCTTGATTCCTCTGTCTTTCATCAACTTCCTAACTCTAGTAACATCATCCCATCTACCTGCTTTTGCAT AAATGTTCGATAGTAACGCGTAACGGCCGCTGTTTCGAGGCTCCATATCAAGCAAAATCCACCCTACCTTTTCTCCTACCTCAACATTTCCATGTACCCT GCATGCATTCAAAAGTGCTCCCCAAATAGCTGCATTAGGCTTTACTGTCATAGACTCTATAAACTTCTCTGCCTCTTTTATAAGCCCAGCTCTTCCAAGA AGGTCAACCACACATCCAAAATGCTCCATCTTAGGTTCAATGCCATAAACTCTATTCATTGAATTCAATAAAGCTACACCACTTTCAACCATGCCTGCAT GTGCACATGCATTTAGAACACTCACAAAGGTAACATCATTTGGCTTCAGCTTTTCCTCTTGCATCTTTTTTAATAGCTCAATTGCTTCTTCAGCTCTTCC ATGAATAGATAGACCTCCTATCATAGCATTCCAAGTGGAGACTTCTTTCACTCTCATCTTCTCGAAAACTTCCCACGACATGTCAAGACGCCCGCATTTA GCATACATATCTATCAAAGCAGTTCCTAACACTGCATTCACTTGAAAAGAATTCCTTTTCACATATGAATGAATCCATCTACCTTGATCTAATGCCCCTA AATTGGCACAAGCAGTTAGAACACTTGGTAATGAGTATGGTTTTGGCTTTACCTTTTCTCTTTGCATTTTATGAAAAACTTCCAAGGCCTCTTTGAAACA CCCTTGTTTGATATAAGCATCAATAATAGCACTCCATGATATTTCATCCCTCTCTTCCATATCATTGAACAAAGTCCTTGCACTCTCAATCATTCCACAC CTAGCCAAGCCACTTATCATTGTATTCCAAGAGCCAACATTCCTATAAGGCATACATCCAAACAAGTCCTTAGCTTCTTCCACCTCTCCACACTTCAAGT ATCCATCAATCATGGCATTCCAACAAACCACATCAGTTTCACCTCTCTCATCAAGCATTCTCCTTGCCTCTTTCACAAGTCCAAATGATGTATACATTTG AATACCAGCACTCTTAATGTGACCATCACTAAGCCCATGTTTCACTACATGGGAGTGAAACTGAATCCCTTCTTTAACAGAACCTGTGATAGCACAAGCC TTGAACAAAGTTGGGTAAGTGAACTTGTTAGGCTTAGAGTTCAAGAGCACCATCTTCTGGTAACATGATATAGCCTCATGTGGCTCTCCATTCTCTAAGC TCCCTTTCAAAACTATATTGCATACAAAAACATTAGGCCTTGGGATTTGATCAAATACTTTGATTGCCAAGGCAAAGTTGTTGAAATGAGGGTTAGCATA GCACTTCACTAAAGTACCAGATACATAATGGTCTTGGAAATGACCAGTTCTCAGTATTATAGAATGAACCTGCCTGAGATGTTGAAGAGAATTGAAGCAT TTCTTGTTAAGGATATCAAGGACTTTTTTCTGTGATAGTTTTGATGTACTCTCTGTTGAGAATTCCAGTGGTTTGAGGCCAGAAGGAAAATTTGTGGCTG TGGTGCTCATGTTTTCAATGTTATCCAGTTTCTTGCAAAAGGGTACGTGTGAAAATCAAGCAACAAGGTTTATAACGTTGAGTTCAGACTGTAGTAGCAT TAACTTTTGTCCATACTCTCCAGTCTCCACTTGCAAAACCAATCTAACAGTGAATTTTATACAACTGCAATGCTATTTTTAAGTGTGATGTTATGTCATC TTAATAATCGTGCTAAAATATTCTTAATCATAACAAAGTAATGTTAGTAATGTTAACCTCCCACTCACATTAAATAAACATATTTAATAATAAATATGTT TCAAATAAATACTTTATATTAATTCTAATAAACACATTCTCACTGAACAACCCATTTTTATGACTTTATCTAGAATAATTTTTTTCTTCTCTATTACTCT GGGTGAAAATTTAATTTTTTATTTACTTTCAATTTTGAGATATTGTAAATAAAGAAATAAATTGAGAAAGAATATTATGGGATGCCATTGTCTTACCATT GTGCATTTACTTGTAACAAATCCCCACTAGTGATATTTCGTCCCTAAATAGTTGTGTATTATGTCTTTAACAGATAAAAAAAATTCAATTAATATAAAAA AATTATTTTATATTTCTAATAAAATTAGACTGGAAATTGGTATGGAAGATCTCTCTCGTCTGAGTTAAGCATTGGACAGCACCAGTGCCACGTGGCTGAC CAAGATGACTAGGACTCTAATCCAACTCCTAAGGTTTGTTTCACCAAAGGAACACGAAAAAAATGGCCACACAAACAACACTAGTTGCACTTTCCGGCCG CATGCCAAACACCACAACCCAGGAGGCTAGAGATTAGAGTGCGGCGTCCACACCTCTTCCACCACCCCTAACAACATTAAAGATAACCTCTTTGCAAATA AATGCAAACACCCACTAACTCATTTTCTTCGATACTATAATCATACACAAAAGATTTCATATTTAGTTCAGTATATTGAAAAAAATAGTGTAACTGTGTT TTAAGGATGTAGTTAACCCCAAAAGGAAGGGCATTGAAAGAAGAGGGTAAGAGAGGAAGAAAAGAAAAAAGCGTTAGACTGCATGAGTTGGGAAAAACCT AGTTGGTTTTTCTTCAAGTTTATGAAGTTGAAGTTTTTTTAAGCAGCGTCAACTATGGCTATTACTGCTACGGACAACTTCTCTTTTATTCATTTTCGCC AATTTTCACAACCTTCATTATCATCATCCCCTTCTTATCGAATACGACACCGTTTCCCTTATAGCCGATTGTTGAACAAGCTTAATTACTCGTGTGCTTC TCACAGATTTTCCTGTCTTAGTTCTAGATGTTCAATAACAAATACTGATATACATCTGGATCATATCACAACGGATGACACTGAAGGAGCGTCTTCAGCT GTTGAACCTGAATGTCTGGTGCCAATAGTTAAACTCAATTCTGATATTCTCGAGACTGTATCTTCGAACGTACTTAATGAAGCCACATTTGTAGATACTC TCTTGACAGCATTACCTGTAGGTTATTTTCCTGCTTTAGGGCGTCAATAAGAATAACCTCACTATTTCTCATTTTTCATGGTGTGTTCCACAGATTTTGA CTGCTGAAGAGCAACATGCCCTAGCAGCTACACCAGCACACCCAGCTGGGTTACATGGTGGGATGATTCTCAGTCTTGCTAACTCCAACTATAACATGGT CGTTTATGAGAATGTTGTTATAGTTCCTGTTACTGAGATTTATGTAGGATTACTTTAACTGGAGTTTCCATTTGGGATAAATTGAACTGATAACAGATTA AATGCACTTCACTTTTATTTCGGCATCTTGATACTATGTAGGAAAATAGACTGAGATCTTCATGCTTTTTGGCAATTAGCTCTATTTACTTGCAGATTAA GAACTACCATAAATCAAAATCCCCAAATTTACTCCCTTGGATCTAAAAGCATTAAAGAGCCCGTCTATTGCACCAGATGAAATCAATTACTCTTGGCGTG GCCAGTCTTTTATTTCACACCTATGTTTATTCCTGCAAATTTATCTTAGGGTAGCTTGCCGAGACACTTTTCTTAAATCTCTAGAGAGATCCCATTAGCA TGATGTGCTATCTTCTTTAAGTTGTGTTGAATCTCGCATAGCAATCTTATTGTGTGTCATTTGTCTAAATAATTGTTTTTTATGGCAGTTGATTCTTGTC CAGTGAATCTATCTGATGATCTTGTTTTCTGTCTTTTGTTGTCTACATTAATCGATGACTGTGAAGTTGAATCATCTAAGCAGCTTTTAACTTGAAGGTT ATATGTTTTCAGCTTTCTATGCTAGTTGCATAGCTGCAAATATGGTGGAGCAGCTTTGGAATTTTGCTTGGCCTTCTGCCATTGCCTTGATTCATCCAAG TCTTTTGCCTGTTGCTGTGATAGGTTTCTTCACTAAAGTGGCTATAATTATTGGAGCTCCCTTGATTGGCAAAGTTATGGACCATGCTCCGAGACTGTAT GGATATAATTGTTTGACTATCATTCAGGCCACTTCCCAGTTGCTATCTGCTGCAATGATTATTCATGCCTATTCGGTGCCTCCTACTTCAGTTTCAACCC TGCTTCTACGTCCATGGTTTGCCATATTGGTTTCAGCTGGATCTGTTGAGAGGCTATGTGGTGTAGCTTTGGGGGTTGCAAATGAGCGTGACTGGGTTGT ATTGCTAGCAGGAGTGAATAGGCCAGTTGCACTTGCACAGGCAAATGCTTTTCTTAACCGAATTGATCTCATGTCCGAGATAGTGGGGACATCGCTGTTT GGAGTTCTTCTCTCTAAATTCCATCCTGTAACCTGCTTGAGAGTTGCGGCCGGCTTAATATTGGGGTTACTGCCTGTTACAATTGTTTTCACATTGTTAG CAAATAAGCTTTCTACTGGTGTTCTTGACCGACATAAGCCTCCACAAACCTGTTGCACAACATTCAGTGAAGATTTTGCACCAGACACTGACAGTATAGT GGTTAAAGGTCTGGAAGCCATCAAGCATGGCTGGAAGGAGTATCTAGGCCAGCCTGTTCTCCCTGCTAGTCTTGCCTGTGTTCTCCTCTACTTCAATATT GTCCTTGCACCTGGAAATTTGATGACAGCATTTTTAACACAGCGAGGCTTAAGTCCATCTATCGTTGGAGGGTTCAGCACAATGTGTGCTTTTATGGGTG TTGCAGCAACATTTGTGTCTTCAACTCTGGTCAAGCAATTTGGCATTTTAAAGGCCGGGGCTGTTGGCTTAGTTTTTCAAGCTTTACTTCTCAGCATGGC TGTTGCTGTATATTGGTGTGGATCAATTTTTCATCAGAACCCACTTCTAGTTTTCTTGTCTTTGATTATTTTATCACGGTTAGGACACATGTCATACCAT GTCGTAGGGGCACAGATTATCCAAACAGGAATACCATCATCGAAAGCAAATATCATCGGGACAACAGAGGTTGCTGTCGCTAGTTTCGCAGAGTGCATAA TGCTGGGTGTTGCAATAATTGCAAATGATCCTTCTCATTTTGGAGTTCTGGCAATATTGTCTCTTCTATCAGTGGTTGGTGCAGCATGGATGTTCTGTAG ATGGTTGTTGAATCCAACAGATGAACAAAAAGTCCTTTTTGCTTATGATCCTCAGTTTTAATTTTCATTTGTTCCATGTAGCTGCCTTTGTGCAAAGGCT TTTTGATGTGAACAAGAACCAAAAATACATTATACTATCAACATTGTGGATGATTATTCACTTAAATACAAGAGCCAGATGCTTTTTCTTCTCAACTACT CATCCTCATTGATACTCATTGTATGGACAAATAGATAGCTTTACTTGTAATTCTGTAAATGTTAATATTCCTTCATGTTTTGTCAGTGTACATGACAAAG TGTATTATTAGCTAATAGCTAGAGATGCCTAGGACCAATGAATACATATTTTATCAGTGATTACTATTCACTTTTTTAGTTTTTAGTTTTACTCTCTAGT AGAGGATATAAATTGTAATATTATGCTTTATCCACATTCTTAAGAATAATGATTGGCATATATACACGAATTTTTTTACAGAATAAAGCTTAAAATATCT ATCTAAAAAA BLAST |
Tissue | flowers |
Gene name | LI_gene_76643; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_211552
Blastp | Pentatricopeptide repeat-containing protein At5g66520 from Arabidopsis with 41.73% of identity |
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Blastx | Solute carrier family 40 member 3, chloroplastic from Arabidopsis with 66.52% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT5G66520) |
CantataDB | Link to cantataDB annotations (CNT0002180) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019429169.1) |
Pfam | PPR repeat family (PF13041.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |