| Id Trinity | FTRINITY_DN58395_c1_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_212074 |
| Sequence | CGCATACCCAAAATCTTCCATCACATTTTTCTCTCATTCTTGTTCCTCTTCAATATCGAGCAATAACACCATTCATTCACTCACCCAATCTCTCTATTTC TCTCTCAGCATCAATGCCTGGCCAAAAACGCTCTTTCTCTGACTCTCTCAACGATGGAGACACTTCTTCACAGTTCCCCCACCATGTCAAACAGCAACAA CAACACCAGCAACAACCTAAGCAGCACGAAGATGAAGACGAGGGAAACGTTGAGCACGAGGAAGAAGAAGAGCAAGAAGGTGATGCAAAAGAAGAACAAA ATGATGAAGATGAAGAAACAGGTCAACACCAGAACAATAACAACGATGAAAAACCACAGGATTCTGACGAAACTACATCTTCTGGCCCTGAAGATAAATC GGAGTTTGTGTATGTAGAACTTCATGAAGTTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGCATTATCAAGAAAACAAGAACGGTTATGGAATGCTTG CACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGATTAGGGAACAATGAATGTCCTGCTTGCCGTACACATTGTGCCAGTCGTCGTTCTTTGAGAG ATGATCCAAACTACGATGCACTTATTGCTGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAA TAAGCAGCTTTTCTCACAGATTCAAGCTTCAATTGCAAAAGTAGTTCAACGACAGTCTGAAGCACTGGGAAAGAAACGTAAAGATACACCAGGTGCATCT GTGACAAGATCACAGCGTAATCAACGAAATGTTCATTCTAGGAGACAGAACCAAGTGATTGATAATCAAGGGTCTGAAGATAATGAAGAGGAAAATGACA ATAATGAAAAGGACTCATCTTCTGCCGATGAGCGGTGTACAGAACCCAGGCAGAGAAAGCGAAAGAGATGGACCAGAGTTCGCCCCTCTCAGCCCTCATC ATCAAGGGCAAGTCCTGATGGTGGAAGCATAGAAAGTGATATGGATATAAGTAGAGAAAACCAAGGAACTTCAAGGCAGGTAACAAGACCTCGAAAGCTT ACTTGGGGAGGGGGTGGTTTTAGAAGTCACACACGGCATGGCAGTGGTGGTGGTAGCAATAGCAAAATTTCTCGCAATGGTCGATTGTCGAAGTTGGTTG ATCATCTCCGCAACTTGGACGAAAGCGCTGATGAGTTCGAAATCCATCTCATGCTTGTTTCTGTGGATAAACAAAGTACACCAATTTTGCAGCAGCCACA CCTTTGCTGTCGACCAACTACATCTGTCAAGCACCTTTGTGAATATGTTGCTTGTCAAACGCCATTGGCAGTTGAGGAAGTTGAGATATTGGCAGTTAAA GGATGCGGCAGTACAAAGTGTGACAAGGCAACCTATGATACTTCAGCCTTGATATGTGACAAGCTAACAACGCTCGTTATTGATCCGTGCAAAGATGACC TGGAAATTCTGCAAGAACATGAATCTTTGGCTGGGATTACATCCAAATGCATATCTAAGATGGAGCATTTGATTCTGGCATACAGGCGCAAGGAAGCACC ATAATCATGCTTTCGTGCTCATACTTTTTATGTACATAAACAACGAACCGCTGCGTGGCGTGATCGATTCTCTAGTTGCGTCCTCAAGACCTCAACCATA AAATATATACCTAGAAAATACTAAAATATATGAACCTCTCTAAAGATTATGCAAGCTTAGTGATATCCTCCGTAAGCTTTATATTCACTTTATATAATGC TCGTTAGAGTTTCTACTTTATTTAATTTTCAGTGTTTCCCAAATCTCAATTACCAAAGGATGTTTTGAGCATGGTGTCAAATCTATCATAAAGAATGCAA TAATAGTAGTAAACGAGTGTACTACATATATAGCAGATTTCATAATCTTCATTGTGGTCAATGAATGTTTTAATGTAGAAGGGGATCTTTTGTTAAATAG ACATTAATGAAGATATATTAGAAAAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_76716; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_212074
| Blastp | Putative E3 ubiquitin-protein ligase RING1a from Arabidopsis with 50.24% of identity |
|---|---|
| Blastx | Putative E3 ubiquitin-protein ligase RING1a from Arabidopsis with 48.23% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (AT5G44280) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432121.1) |
| Pfam | Zinc finger, C3HC4 type (RING finger) (PF13923.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |