| Id Trinity | FTRINITY_DN58402_c4_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_32501 |
| Sequence | ATAGGATACCCTTGGTAGTAACAAAAAAAAAAAAAAAGCGTACATGTTTTATTCTGTGAATGTATGGTCATGTTTTGCTTAATAGTGATCTAAGGTTTTT GGTGTATATTTTCTATCTACCGGGCTAGGCCATGAGATGATCAATATATAGAAGTTTGTGGCGTTGTTCGTGATAATGTGTAACTGACTATGACAAACCT ATTATAGTGCCAAGGTCAAGATCTTGGCTAAAGATTATTGTGATATAAGATTAAGATAAGTATGTTGTTAATAGGATCCTATCTAGAGTGGTTTCAACCC ATGAAGAGAAGTTCATATATTCTTCGTGTTGTTGTTTTATACTTATGGTATCACTTGGTGTGTGTCTGCGTGTGTGCATAGAAGAGAATGGAACCTTTTA TTTTTAGTTCCATCGTGGTTATTGGAACAAAAATGTCCCAGACAAAATCTTCAATACAGGGAAAAGAAAAGGAGTAGCTCCAAGTCTTGTTCTCTTTTAT TTATAAAATACATCAAACATTAACTAAAACTCATGTTAGTCTTATTTTGTTCTAACACATCTAACAAAGTTCTTGTTTTCTTAATTGTATCTGGAAATTG TATAACTCTCCAAATATAAATTATCTCTTATTCAATTTAGTGGAAGTTTCAATTCAGACTAGGAAGTAGGAACTCTGAGGCGAGGAATATAGATAAATCC GTTCTCTCTTCACCTGAGATTCTTCCTTTGTTTTAATCTATTTTATACTGGCTAATTTTTTACTAAGCATGCAGCTATAGAGAGACAAAAGTAATAAAAA ATATTTCTTTGGGAGAAATTCACAAAGGAGCTCTTGATATAACATGTTATCATGAAGGAAAGACAGAATAGTCACTCAAAGTGTACATTGAAGTAATTTC AGGCCAATTTATTGTATAAAAAAACTTCACGTGGTTTTTATTTTTTCTCAGAAGTGCTTTATTATCAAAACTCCCTTAGTTATTTTGTTGTTTTCTTTCA CCTAAGTAATGTGTTATCCATCCTCTCTCTTTCTGTGTTTGCTTTGAATTAAAACTCAGATCAATATGTCTCGAAGATATGATAGCCGAACAACAATATT CTCCCCTGAAGGACGTCTTTACCAAGTGGAGTATGCAATGGAAGCCATAGGTAATGCTGGAACTGCAATTGGCATCTTATCTAAAGATGGTGTTGTTCTG GTCGGCGAAAAGAAGGTCACATCCAAGTTGCTGCAGACCTCAACTTCCACTGAGAAAATGTATAAGATCGATGATCATGTTGCATGTGCCGTGGCTGGGA TTATGTCTGATGCCAACATCCTAATCAATACGGCTAGGGTCCAAGCCCAACGCTACACACTCGCATACCAAGAGCCTATGCCTGTTGAGCAATTGGTTCA ATCTCTTTGTGATACTAAGCAAGGATACACACAATTCGGTGGTCTTCGGCCATTCGGAGTCTCATTCCTGTTCGCTGGATGGGACAAAAATTTCGGCTTC CAACTTTACATGAGTGACCCTAGTGGAAATTATGGTGGTTGGAAAGCTGCAGCTATCGGTGCAAACAATCAGGCAGCGCAGTCGATACTAAAACAGGATT ACAAAGATGAGATCTCTCGGGAAGAAGCTGTTCAACTTGCATTGAAGGTACTGAGTAAAACTATGGACAGCACAAGTCTAACCTCAGATAAGCTTGAACT TGCAGAGGTTTTCCTTTCACCTTCCGGAAAAGTGAAGTATCAAGTTTGTCCCCCGGAGAACCTGACTAAGCTGTTGGTGAAGCATGGGGTGACCCAACCA GCAACAGAAACTGCTTAGCTTTGTTGTTCTTTGTCATATGAGGTTTGGTTATGCCTATGCAATGAATTTCTATGTTTGTTTGTTCATTTTGGAATACATT TATAAACAATCTATGTCTTGGTTATGCTAATGCCTTTTTATCTCATATACTTCTTTAATTTTCAGGACTTAGATATATGATATTTTGGGTCTCCTCAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_76796; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_32501
| Blastp | Proteasome subunit alpha type-4-A from Arabidopsis with 90.4% of identity |
|---|---|
| Blastx | Proteasome subunit alpha type-4-A from Arabidopsis with 90.4% of identity |
| Eggnog | The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(COG0638) |
| Kegg | Link to kegg annotations (AT3G22110) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019442592.1) |
| Pfam | Proteasome subunit A N-terminal signature (PF10584.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |