| Id Trinity | FTRINITY_DN58447_c4_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_32690 |
| Sequence | CACCTTCTTCCCTCAGCTCAGCTTTCTTCTCCAAAATTCTTTGTTTCTCTTTCTCTCTACTTTCTCTCTCTTTCTTTCTCTCTCTCTACTTTCAACATTC ACTCATAGAATTCACTTCAATTCTATCATATCATTCATTTCAGCAATTCGATTTTTCTGTACCGATTGGAGGATCAATTCTCCATTGTGAGGGGATTGAT CGAGTTTCGCTGAATCAATTTCTATTATCCCTGCGACACTGTCACTTCCGAAATGAAGTTGAAGAGAAAGAGGACACTTGAAGTGAGAACAGTTGGGAAA TACTCCATAAGAGACACTTCTTTGAATTCAAAATTGTTTGCATTTGCACAAGGATTTGGTGGAAAGGAAGAGGGACTTGGATTAATTGCATCAGCTGCAC CTAATGCCTGTGACCCTCTTGCTTATGAATTGGGTTATACCCTTCATTTTGAGTTTTATGCAGCAAATAAATCAGAGTGTGACATCAAGGTGTCTGAACC CTTGGTACAAGGATTGCAAATTATTCACTTATGTGACATCAACAAATGTGTGGAAACTGATCTGGAGCTTCTGCGTAAGTTAGTTACAGAATATAAGTTA CCTGCCGGTTTAAGATTTTCTCTATTGACAAGATTGCGGTTTACAAGGGCATTTGGTTCTTTGGCTTCTAGACAGCAATACACATGCATTCGTCTTTATG CTTTCACAGTTTTTATTCAAGCATGTAGTGATGCCAATGACCTGGTTTCGTTCCTTAATGCTGAGCCTGGATTTATCAATGAATTAGTGTCATTGCTGAG CTATGAAGATGCAGTCATGGAAAAAATCCGGATTTTATGCTTGCATTCATTAGCTGCTCTTTGCCAAGATCGATCCCATCAAACTTCAGTACTGACAGGG GTTACATCTGGTGGGCACCGTGGAATTTTATCTAGCCTGATGCAAAAAGCCATTGACTCCGTTGTTAGTGGTGACACCTCAAGATGGTCTGTTCATTTTG CAGAAGCTCTATTATCTCTTGTCACCGTGTTGGTTTCATCATCATCTTCTGGGTGCTCTGCCATGCGTGAAGCAGGATTTATTCCTACTCTGCTACCTCT CCTTAAAGATATAAATCCACAACATTTGCATCTGGTTGAAAAAGCAGTGCGTATTTTGGAAGCTTTTATGGATTACAGTAATCAAGCTGCTGCATTGTTC AGAGATTTGGGAGGTTTAGATGATACTATCTCTCGCCTAAAGATTGAGGTCTCCCATGTAGAAACTGGTGGAAAGCAGCCAGATGAAAATTCTGAGTCTA GTGCCAGGAGTGCACATATGAAAGAAGGTTCTTCAACTAGCCAAGATGACATGCAACCTTTGTATTCTGAGCCATTAATTGCATATCATCGGCGGTTGCT GATGAAAGCTTTATTGCGTGCTATATCCCTGGGAACTTATGCCCCTGGAAATACTACTCGTATCTATGGATCTGAAGAGAATGTGCTGCCTCATTGCTTA TGTATAATTTTCAGAAGAGCCAATGAATTTGGTGGTGGAATTTTTTCACTCGCAGCTACTGTCATGAGTGACTTAATACAAAAGGATCCTACATGTTTTC CTGTCTTAGATACAGCTGGTCTTCCATCTGCCTTCTTGGATGCTATAATGGATGATGTTCTGAACTCTGCAGAAGCCATTACATGCATCCCCCAGTGTTT GGATGCCTTATGCCTGAATAGTAATGGTCTCCAGGCTGTGAAAGATAAGAATTCTTTGAGGTGTTTTGTGAAAGTGTTTACTTCTAGAACATATTTGCGT GCTCTTACTGGTGACACACCTGCATCTTTGTCTAGTGGATTGGATGAATTGATGCGACATGCTTCTTCATTACGTGGGCCTGGAGTGGATATGTTGGTTG AGATTCTGGAAACTATCTCAAAAATCGGGTCTGGAATCGATTTGTCGTCCTCGTGTTCTGATCCTTGCTCTTCAACCTCTGTTCCAATGGAAATGGATGG CGAGAACAAAAATTTGATGTTGCCTGATAATAGGGAATCTTCCAAGACAGATAATACAAAGCAGATTACTGAGCCTTCTCCTGATGCTTCAATAATGAAT ATTGAATCATTTCTTCCAGATTGTGTTAACAATGTTGCTCGTTTACTTGAGACAATTCTCCAGAACGCTGATACGTGTCGAATATTTGTTGAGAAAAAGG GGATTGAAGCTGTTCTCCAGTTATTCACCTTGCCGTTGATGCCTCCTTTTGCTTTTCTTGGGCAGAACATATTTGCTGCCTTCAAAAACTTCTCCCCCCA GCACAACGTTTCTCTTGCTCGCACTGTATGTTCCTTCTTGAGGGAACATCTGAAATCAACCAATGAGCTTTTAGATTCGGTGGGAGGAACTCAGCTTGCT GTAGTTGAATCTGCAAAGCAGACAAAAGTGTTGAAATATCTTTCTAGCCTTGAAGGTCTTCTAACTCTTTCTGCATCTTTGTTAAAAGGAACGGCAACTA CCGTGGTCTCTGAACTAAGCACTTCAGATGCTGATGTTTTGAAAGATCTTGGGAGAACCTACAAAGAAATAATGTGGCAAATATCTTTGTGTAATGATTC CAAGGCAGAGGAAAAGAACACTGATCAAGAACCTGGAATTTCACAGGTACCCCCATCTGCTGCTGTTGAAAGAGAGAATGACGATGATGCAAATGTTCAG ACAGTGAGATACACAAATCCAGTTTTTGCTAGGCATGGTTCGCATTCCCTGTGGAGTGGAGAACGTGACTTTGTTTCTGTAGTTCGTTCTGGAGAAAGTT TGCACCGCCGTAATCGGCATGGATTATCCCGCCTAAGAGGTGGAAGGACTGGTCGTCACGTGGAAGCTTTAAACATTGATTCTGAGGCAGCTTCAAGTTT GGTGGAGGCACCTTCATCCCAAAATCTGAAAAAGAAAAGCCCTGATGTTCTTGCCTCGGAGATTCTTAACAAGCTGGCTTCAACTTTGCGCTCTTTCTTC ACTGCTCTTGTAAAGGGATTCACCTCACCGAATCGTCGTAGAGCTGACCCTGGGCCACTAAGCTCAGCTTCAAAGATTCTCGGAACTGCCTTAGCTACAA ATTTTTTAGAGGCTCTTAGTTTTTCTGGGCACTTTACTTATGCTGAACTTGAGATGTCGCTTTCTGTAAAATGTAGATATCTTGGAAAAGTTGTGGATGA TATGGCAGCTCTCACATTTGACAGCAGGCGCCGGAGTTGTTATACTGTCATGGTTAATAATTTTTATGTCCATGGGACATTTAAAGAGCTACTTACAACA TTTGAAGCTACTAGTCAGTTGCTATGGACACTTCCATGTTCTTTTCCATCCTCAGATATTGATATTGGAAAGAAAGGGGATGGGAGTAAATTGTCCCATA ACATTTGGCTACTTGATACATTACAAAGCTACTGTCGTTTGCTCACGTATTTTGTAAACTCTTCTATACTTTTGTCCGCAACCTCAGCATCTCAGGCAGA ACTTCTTGCTCAGCCAGTTGCAGTTGGCCTGTCAATCGGACTCTTTCCGGTTCCTAGAGATCCAGATGCATTTGTTAAAATGTTGCAATCCCAGGTTCTG GATGTGATCCTACCAGTCTGGAATCATCCAATGTTTTCTAATTGCAGTCCTGGTTTCATTTCCTCTATTATTTCACTTGTTACACATGTATACTCTGGCG TTGGAGATGTCAAGCGGAATCATAGTAATATTGTGGGAATCACAAACCAACGTTTCATGCCCCCACCACCTGATGAGACAACTATTGGCACAATTGTTGA AATGGGATTTTCTAGGGCACGGGCTGAGGAAGCACTGAGAAGAGTTGAAACAAATAGTGTTGAAATGGCCATGGAGTGGCTGTTTAGTCATGCTGATGAT CCTGTACAGGAGGATGATGAACTTGCAAGGGCACTTGCTCTGTCCCTAGGAAATAGTTCTGAAACTAGTAAAGTGGATGGTGCTGAGAAGACTATAGGTG TGCTAACTGAAGAGGGACATGTGAAGAAACCTCCAATTGATGATATACTTGCTGCTTCTGTAAAGCTGTTCCAGGGGAGTGATTCTGTGGCATTTCAGTT AACAGATTTGCTTGTAACACTTTGCAGTCAGAACAAAGGTGAAGATCGCCCAAAAATAATATCTTATCTTCTGCAACAGCTAAAACTTTGTCCATTGGAT TTTTCGAAGGATAACTGTGCATTGAGTGTGTTAGCACATATTATAGCACTGCTTCTTTTTGAGGATGGAACTACACGTGAAATTGCTGCTGAGAATGGCA TCATATCTACTGCCATAGATATCTTGACAGACTTCAAAGGCAAACATGAGTCAGGGAAAGAACTACTGGCACCTAAATGCATTAGTGTTTTACTACTTAT ATTGGACCAGATGCTGCAGTCAAGACCAAAAACTGAGAATACAGATGGAACCCAAACTGGTTCTGTGCCTGAGTCATCTGGGGATCATGGTTCCCTTCAA TTTGCAGGTGTGATTGTGCAGAAGGAAAAAAAATTAGATGTAAATGTGAAAGAACCTGGTGCTGCTTTAGATAACATACTGGGGAGCTCTACTGGTTTTG CATCTATTGATGAGAGTCTTAAGTTGCTGAATATTGTTTGTGATTTGATAAAACAACATGTCCCGGCTGTGGTCATGCAGGCTGTTTTGCAGTTATGTGC CCGATTAACAAAAACACATGCTTTGGCTTTACAGTTCCTTGAAAATGGAGGGCTGACTGCTCTTTTTAGTCTTCCAAAGAATTGTTTTTTTCCTGGGTAT GATACTGTTGTATCAGCTATTGTTCGACATCTCCTTGAAGATCCTCAAACACTACAAACTGCCATGGAATTAGAGATACGACAAACTTTAAGTGGAAATC GCCATTCTGGACGTGTCTCTCCCCGATCATTTTTGACATCATTAGCCCCTGTTATCTCTAGGGATCCAGTGGTTTTCATGAAAGCTGCAACAACAGTTTG TCAGTTAGAGACATCAGGGGGAAGGACAATAGTTGTTTTATCGAAGGAAAAAGAAAAGGAAAAATCTAAAGCATCGAGTACTGAGGCTGGGTTATCCTCT AATGAATGTGTCCGAATACCTGAAAGCAAGTCACATGATGGATCAGCTAAATGTTTGAAAAGCCACAAAAAGGTTCCTGTTAATCTCACTCAAGTAATTG ATCAGCTTCTTGAGATTGTGCTAAAGTACCCGCCTATGAATGGGCAGGAAGACTCTGAGTGTGGCTCAACTTTCATGGATATAGATGAACCTGCTATGAA GGTTAAGGGTAAATCAAAGGTTGAAGAGGTGGGAGTGTTAGAGACTGAATCTGAAAGGTCTACTGGATTGGTGAAGGTAACTTTTGTTCTCAAGTTATTA AGTGACATTCTTCTAATGTATGGGCATGCAGTGGGTGTCATACTCAGACGTGATTCTGAAATGGGTCAATTCCGTGGATCCAATCAACCATCTGGACATA GTGGTATTATCCATCATGTATTACATCGGTTGCTGCCCCTCTCTGTTGACAAGTCTGCAGGACCTGATGATTGGAGAAGTAAGTTGTCTGATAAGGCTTC ATGGTTCCTGGTAGTTTTGTGTGGTCGGTCTAGTGAAGGGCGTAAGCGAGTGACAAATGAACTTGTTAAAGTATTGATGTCCTTTTCAAACTTGGAGAGC AATTCAACGAAAAATAGTTTACTGCCAGATAAAAGGCTTTTTACTTTTATTGACTTAGTATACTCTATTTTGTCAAAAAATTCATCAGCTGGTAGCCTAC CGGGTTCTGGATATTCGCCTGACATTGCGAAAAGCATGATAGATGGTGGAATCATTCAGTGTTTAACTAGTATCCTGCAAGTGGTTGATCTGGATCATCC CGATGCACCCAAGATTGTGAATCTTATACTAAAAGGTTTAGAAGGTCTTACAAGAGCTGCTAATGCTAGTGAGCATATCATTAAATCTGATGGGATTGAA AAGAGAAGATCTGCTGGTTCAAATGATAGACCTGATGATCAAATAAGAACTTCATCTGCAGCTGAAACAGTAAGAGATGATCAGAATGCAAGCAGTCAAG AGGCACATGGATATACAATGGATAATGCACATGATCAAGGGACTTCTCAAGGTAATCATCACACTGATAATCCAAATCAAACAGTGCAGGGTATGAGAGT TGAAGGGGAGACTCAAAACCCGTCAATGGAACTCGGAGTGGACTTTATGCCTGAAGAGATTGGAGAGGGTGCTGTCTTGCATAACCCAGATCAAATTGAG ATGACTTTTCATGTTGAGAATAGGGCAGATGATGACATGGGTGATGAAGATGATGATATGGGTGATGATGGTGATGATGATGAAGATGATGAAGATGGAG AGGATGAAGAAGAGGATATAGCAGAAGATGGTG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_77157; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_32690
| Blastp | E3 ubiquitin-protein ligase UPL1 from Arabidopsis with 61.4% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase UPL1 from Arabidopsis with 61.16% of identity |
| Eggnog | ubiquitin protein ligase(COG5021) |
| Kegg | Link to kegg annotations (AT1G55860) |
| CantataDB | Link to cantataDB annotations (CNT0000539) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448017.1) |
| Pfam | Domain of Unknown Function (DUF908) (PF06012.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |