| Id Trinity | FTRINITY_DN58524_c2_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_7691 |
| Sequence | ATTTTGTATATTTGTATATTTGTATATTTGTATGTGGTGTGGTGTCCGCAGCGCAGGAGGGTAAGGCAAGCTTACTAGCGTCTTATCCTGATGGCCATCA CTTTGTGTTATGTTTCTTCGCTCTCTCTCTGAATTCATTATTTGAATTTATCTCTCTCTCTCTCTCTCTCAGCCATGTCCTCGTGTTTATTGCCGGATAC TTTCACTTTCCGATACGCTCTTCTTCCATGTAGGTTATTCCTCATTTCTTATTATTCACTCAATTTCCCCAATCCCATTCTATTTCTCATTCTCATTCTT ATTCTCATTCTCATTCTCATTTCATTTATATTCCCATATGCAGCAGCAACTTCATCCATAAAAAGCAGAGATTTTATTGCTTTCCAGCCCCATTGTGTTT TATCAACAACTCCTTCACCCACTGCTCTTACTTTGGAAAAATTGGCACTTTCATCATCATCATCCTCCTCATCATCATCATCCCCATATCTTCCTTCATC CACACAGGAAAACTTCAAAGCAACCTTATCTACACAATCACTCCTTACTAGTGAAGAAAATGTAATAGCTGCTGCTGCTTCTGAAGCTGTTGCTCTTGCT AAAGCAGCTTTGAAAGTTGCAAAGGTTGCTGCCCTACTTGTTAAAAACAAGTCCCCACCAGAAGCAGCATATACACCCCCACATGATTCTTCCAAATCTG ATAATTTAATTCTTCTCAAATGGGTTCAACATTTGGAAGCACAAGAAGACGGTGTAGTATCTGATTCAGAAGAACATGTTTACAATGACATAAAAGAGGA GTCTGATGATACGGAACCCACCTATGAAGAACTTGAGCGTCTCAATCAGCAGCTCTCTGATAGTATAGCTGTAAGATCTACACGCCAAACAGAAAGAAAA GCTAAAAGAGTCAGAGCGGCAGAGAAGTCTGCCACACACATGGTTTCTTTTAAGTCCGGCTCAACCAGCAGGAAAAAGCGCGTTCCTACACAAGAAGTAG ACTATTCTGATCCACTTCGTTACCTAAGAGCAACGACTAGCACTTCTAGGCTTCTCACTCCATCAGAAGAAATTGAGTTGTCCGAAGGAATACAGGACCT ACTAAAGCTTGAAAAACTCCAGGAGGATCTCACAGAAAGATGTGGTAGCCAGCCCACGTTTGCTCAATGGGCTGCAGTGGCAGGGGTAGATCAGAAGACC CTAAGGAAGCGTTTAAATTATGGCATGTTTTGCAAAGACAAAATGATTAAAAGCAATATACGGCTTGTCATATCAATTGCAAAGGGTTATCAGGGTGCTG GGATGAATCTGCAAGATCTTGTCCAGGAAGGATGTCGAGGCCTGGTAAGAGGTGCAGAAAAGTTTGATGCTTCCAAGGGTTTCAAGTTCTCCACCTATGC TCATTGGTGGATTAAACAGGCAGTTCGCAAATCGCTTTCTGATCAGTCAAGGACTATCCGCTTGCCATTTCACATGGTGGAGGCAACTTACAGAGTGAAA GAGGCTAGAAAACAATTGTATAGTGAAAATGGAAGGCAGCCTGATGACGAAGAAGTTGCTGAGGCAACTGGACTGTCAATGAAGAGGCTTAGTGCTGTAC TTTTAACCCCAAAAGCTCCTAGATCTCTGGAACAGAAGATTGGGATAGACCAGAATCTTAAACCTTCAGAAGTAATCGCTGATCCTGAAGCGGAAACAGC GGAAGAACAGCTGATCAAGCAATTCATGAAGAAGGATCTTGAGAAGGTACTGGACAGTCTGAATCCAAGAGAGAAGCAGGTGATAAGATGGAGATTTGGA ATGGATGATGGAAGGATGAAGACGCTGCAAGAGATTGGGGAAAGCATGGGTGTGAGTAGGGAGAGAGTTAGGCAAATTGAGTCATGTGCTTTTAGGAAAC TCAAGAACAAGAAGAGAACCAAGCATTTGCAGCAGTATCTCATTTCATAAACCCACCACCAAATATTATTCAAATTACAATGTTGGATGTGAGGTCTCTA GCCACTTTTGTTCTTCCTTTGTATTTTATTTCTCCATTTTTTACTTCATTCTCTACAAGAGAAAAACAAAACGTTATTGTTAGTGTATTAGGAAACCGAT GTACACACAAAGGGATAACTTTTGATGAAGAGTCCAGCATTTTTTAATGTACATGAAATGATTCAAACCAAATAAGACTCTTGAAATGAGTAATATTTTT CTTGAAGACTTAAATCAGCCAATATTGGTAAGTGCAAATACAATCATCATCATCATCTGCTTCATCACACAACACCACCACCACCAAAGAAGAGGCAGCT CCAACATCAACGTCCTCCCACTTCTTACAACCACCTTTCACACTCTCTCTTTTCCTTCCAAACCTGTCTGAGCATATTTCCACAAGTACAACTCAATGAT GGTCACTACTAGTTCATGGCAAGCAAACAGTATGAGTGCAATTGTCTTGAACTTTTGCACGAAATGTACTGTACAATGTACATTGTTCATGGGTTCTATC ACTTTTGACATTGCTTCCAAGTCTTCAGAAAATGTTTCTGTGCCATCTGTTAACCCGAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_77781; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_7691
| Blastp | RNA polymerase sigma factor sigB from Arabidopsis with 64.19% of identity |
|---|---|
| Blastx | RNA polymerase sigma factor sigB from Arabidopsis with 74.14% of identity |
| Eggnog | Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (By similarity)(COG0568) |
| Kegg | Link to kegg annotations (AT1G08540) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019414778.1) |
| Pfam | Sigma-70 factor, region 1.2 (PF00140.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |