| Id Trinity | FTRINITY_DN58524_c3_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_7709 |
| Sequence | TGGTAAGACTGATTACCGAGCTAGGATTCGGTTGATTAACCAGGACAAGAACAAGTACAACACCCCAAAATATCGCTTTGTTGTTCGATTTACCAACAAG GACATCATTGCACAAATAACATCTGCTAGCATTGCTGGTGACCACGTTCTTGCTGCAGCATATGCACATGAACTGCCACACTTTGGTCTAGAAGTAGGCC TTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCTTCTCGCCCGCAGGGTCCTGAAGACACTTGAATTGGACGAGGAGTATGAGGGAAATGTAGAGGC TAGCGGAGAGGATTTTTCAGTTGAGCCTGCTGATACCAAGAGACCATTCCGTGCACTCCTTGATGTTGGTCTTATCAGGACCACCACTGGAAATCGTGTT TTTGGCGCCCTTAAGGGAGCTTTGGATGGGGGTTTAGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAAAAGAAGGAGCTGGATGCTG AGGTTCACCGCAAGTATATTTTTGGTGGACATGTTGCCAACTACATTAAGGCATGAGCACATTTTAATTAGTTCCTTGCTGGATTTTTCTAGCCATTTTG CCAACTGTTTTCAGATATTGTCTGACAAGTCAATTTTTATGCAGACCCTGATCGAAGATGAACCTGAGAAATATCAGTCACATTTTAGTGAATATATCAA GCGCGGAATTGAGGCTGATGGACTTGAGGCACTGTACAAAAAGGTTCATGCAGCTATTCGTGCAGATCCCACAGCAAAGAAGTCAGGAAAGCAGCCACCA AAGGAGCACAAGAGGTAATAAATCATCATGTCACTTGTGAATCCAGCTAGACTCTACAAGTATTGCCAAATGCATGTGTCTATTCACTCATTTGTATTCT CATTTCTGGCAAATTATCTTTAACTGTTGTGAGTTGGGGCTCTGTTTCTGCTATCCATCTGTGCATTTATATATACACAGATATGTTTTTGCCATTAAAG CCTTGATTGGTAATTTTGCCTTAGTAATAACAAGAATCTAAGAGTATCTTTCTGCATCTTTTTTGGCAGATACAACTTGAAGAAGCTTACCTATGAGGAG AGGAAGAATAAGTTGATTGCACGCTTGCAAGCTCTGAACTCTGCTGCTGGAGCTGGTGATGACGATGAGGATGATGAATGAATGTTAATTGCAGTTTCTT AACTTGCATTTAGAGAATCATTTTCTTGAAAATTTACTGAACATTCATGTTCTCTGCACGAAATTTGGTTACTTTAAAGTTGCCCTTATTTTCTGGATTG ATACCATGAACCAACATATTAAGCTTATATCAATTTTCAGTGTTAAATCTTGTCCTTCACTTGATTGTATTATATATATTTTGTTTGCCAAGAGGGAATG ACTGTTCAAACTCCAAAGACATGACATATGACCTGTTACTTTGCAACCTAGGGAGGAGCGTGTAAAAGTAAAACTATGTAAATTAATCCAAAACGAATAT GATGAAAAAAGGACAATTATCTCCâBLAST |
| Tissue | flowers |
| Gene name | LI_gene_77783; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_7709
| Blastp | 60S ribosomal protein L5-2 from Arabidopsis with 87.43% of identity |
|---|---|
| Blastx | 60S ribosomal protein L5 from Cucumis with 86.34% of identity |
| Eggnog | This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (By similarity)(COG0256) |
| Kegg | Link to kegg annotations (AT5G39740) |
| CantataDB | Link to cantataDB annotations (CNT0000907) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_004500722.1) |
| Pfam | Ribosomal large subunit proteins 60S L5, and 50S L18 (PF17144.3) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |