| Id Trinity | FTRINITY_DN58626_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_177427 |
| Sequence | CTATTATTGATTGTCCCCTTCTCGGTGTGAAGTTAAAATCCCTCTTTTCCTCTCACAACAACTGAACCCAGGTTTGAGGCCTGGTTCAAGCACCACCATC ACCCGAAATTCTAATCTCACGTGCCCCTCTTACCCATTGTGGCCTGCTGATTCTCTGTTCAGATGTCCAATAATCCGCAATTTCCGGGCCTACAGCCCCT TCGGCCTCCCATAGGTGGTTCTGGGGATCCTCAACGCAATTTTGCTCCACCCATGCATATTCAATACCGACATGTTGTTCCTACTCAGCAGTCACAACAG TTCATTCCCATGCCTTCTCAACATTACCAACCTACTGGCCATGGAGTTCCCATGATTAACGTTGGAATGCCTCCTCAAAATCCAAACCCCCAATTTTCTC AGCCAATTCAACAGTTGCCTCCAAGGCATAGTCAGCCAATGCCACTCCCACCACAGGCAATTCCATTGCCAGCTGCTAGGCCAAATCTGCATATGTTGTC AGAACCAAAAATGGCTCAGGCTGATTCTCAAGCTCCAAATGGCTACACACCAGGTTTAGGTGGCTCGGGAACGCCACTCTCTTCATCATATACGTTTGCA CCATCCTCTTATGGTCAGATGCAAACTAATTTTGTTTCTACCGGCCAATACCAATCTGTTCCTCACACTGGTTCTTCTCAGAGCATTACCTCTGGCACAT TTATTCAGAGCAACGGCGAACAACCTTCAGTTACAAATGCCATGGCTTCAGCAACCAATCTCCAGCCTCCCCCTGCTATGAATGATTCCACAGATTGGAT CGAGCATACATCTGCAACTGGGAGAAGATTTTACTATAATAAGAAGACCAAACTATCTAGCTGGGAGAAGCCTTACGAATTGATGACACTAGTTGAGGCA GCAACCATCAATCTTGACTTTTACCTCTTATTGTAAGGTCAGTGTTGTGATAATTGTCGGTTGGACTGTCTGATATCAGTTTTTTTGTTTTCTTTGGATG CTGCAGTATAAGAATTTTGTATTGCATGTATTTGAATTTTTAAATCTTGAATAAATATTATGCTCTATACATCATAAGGAACATCAGAAGTAAAACATTT TTTTACTATTTTGTGATTTCTTTCTTATGGTCGCTCACATGCCTTGTATAGAAAGGTTATGTTTATTTGTTAAGGTTAGCTTATAAAAGAGAGTAGTCTT CCACTTTCTCTTCCTCTATCCCCTTCAAGTGTGTACACATATTTGCGTTTCTCTTTAATATGATTTGAGAGTAGGTGATTGCTGACTAAAGAAGATATGT CCTGTGTCCTATTCTTTTCTAATCATGGTGCCAGACAAATGCTAAGGAGATTTCTTTTGACACACATAGGCTAATTTAATTTATTATACTCAAAGATAAG CATCAAAGTAGATAAGTTTCGGTAAATATTTTGTGCCTATGAATGTTTGTTTTTTGCTAGTGTCATTCCATGCTCTCAAAGTTGATGATTTTTTAATTTC TTTAGGACTTGATATATTTCATTTTTACTTTAACCAAGTCTACATGTGTGACTTCCTTAGTGTTAAGATGCTTACAGGTACATGTTGTGCTCCTCTTTTG AGAGGTAGGATATGCTGTGGGGTGTAACTGCCTGCTACCCTACTATATCGCTTGAATGTTAGTAAATTTCATCATTGTATTTTGTCTTGATTGTTAGTTC CTTGTCTGAAAATCCCGTCTTTATTTATCCAAAGTGTGATCGCCAGTCATCACTTGCTTCTAAACCTTGGTGCAATTTTAATTCTATAATCTATTACACT ATCAGTTTCGTATGTCTTGATTATTTAAGAGAGCTGTTAATGTCTTTGAGTAAAATAGTCCATCCAAAGGAATACTTGCAAATATCCTTTGATTGAAATA AATGCAATATTTAGAATATAGGTATTGATTTTTTTTGTACTGCTCTGGCTTAGACTTTCGAGCTTGGGTTTCTGCTGTGGAAATCAGTCAGTTTGTTTTC TATTTCTGATTTTAGGATCTTATGAATAACTGCTGTAAATGATTGTTATAAAAGAACTTCATAGTTGCATCTATTTATTAACTTGGTACAAGTTAAGGTA TAATTACATGGCCATGGTTCAGAACTTTGTGTCCAGTATCTATGAATTATTTAGCTTCCTGTCAACACAATATACTTTGTTGGGAGGATTATAAGTAGCA AGATGAGCTTGGTGATGCCAGTAAAATGGTTTAGTGCATTCTGATTTTCTATTAATTTATTGGTAGGAGTAGAATTAATAATATGGCAATGTGGAAGATG ACTCAACTACAACCGGTACTACAACTTCAAAGTTTCTCCTAAATTAGACATTTTCCATACAAGAATAATGTTTACAAGTTCTTATAAAAAAAGAATAATG TTTAAAAGCTATAATTTATGCAATATATGATCTCTAAAATTTCTGTATCATAGATAACCAGTTTCCTTAAATATTTGATGGATTTTCACTGGGTTCTGGA GTCATAGGGAGTTCAAGTTCATAAAATATCACTGAACAGTTTTTTGCCTCAGAGGTATGAAAATGTAAGAAGATTTATGTGGGTTAGTTTTCTCAGTGCT TGATGTGAGTTCAGTTGTCGTGATTGACCCTTTACTTAGACCTTTTATTTCCTGGATTTTCTGTTCTGTCTTTCATATACTTTGGGATATTTGAATTTCC AATTTCTATTATGAGATAGCTACCATTCTCCATATAGCTGTCATTTTTCTATTGGAAGGAAACCTCTAATGAGAAATTATCCACTTTTTTGCGTTCTTGT CATTTTGCTAGAGGGTGGATGCATCAACAAACTGGAAGCAGTATTCTAGTCCAGATGGAAGAAAGTATTACTACAACAAAGTTACCAAGGAATCCAAGTG GTTAATTCCCGAGGAACTGAAGTTGGCTCGTGCGCAAGTTGAAAAGGCTGCTGTGAATGGAACGTATCCTGAAGCTATACTGATTCCTCATTCTCAACCA TCTGCATGTCCTCAAGTTGTTGAAGCAACACCTGGTGCAGATATTTCATCTTTAACTGCTCCAGGAGATCCAACAAGTCCTGTTTCTGTTGCTCCTGTTG GTACTGCATTTACAAATAATCTTCAACCTGAGATTACTTCAGGATCACCTGCCTTTCCTTCCGTGGTCCCTCAAACTGGAACAAAGGTGGAAGAAGTTGA GGCACCTGAAAATACTGTCAAACCATCAGATGCTGGTGTGGGAAGGGATGGAGCTTCTGTTACCGATATTAATACTGCTAAAACACTGATGGATGGTGCC AACAATATTTCAGTTCAGTATACTCAAGGTTCTGCGGATGGAGTTCCAGCAGAAGATAAAGAAGATGGTAAAACTGATTCATCAAGAGAGAAAACTGATG ATGTGGCTTCAGAAACAAAAGCAGTTGAGCCTGAGCCTTTAGTTTATGTGAATAAGATGGGGGCTAAAGACGCATTCAAAGCACTACTGGAGTCTGTAAA TGTTGGATCTGACTGGACTTGGGATCGGACTATGCGAGTAATAATTAATGACAAAAGGTACGGCGCCTTGAAAACACTTGGAGAAAGGAAGCAAGCTTTC AATGAGTACTTAAATCAGAGGAAAAAACAGGAAGTGGAAGAAAAGCGTATGAAACAAAAGAAAGCTCGGGAAGATTTTAAGAAAATGTTAGAAGAATCCA CAGAGTTGACTTCATCCACTAGATGGAGCAAAGCTGTGCCTATATTTGAAAATGACGAACGTTTCAAGGCTGTTGAGCGTGACAGAGATCGCAGGGATAT ATATGATAGCTTCATGGAGGAATTTGTTATCAAGGAACGAGCAAGGGCACAGGCGGAAAGAAAACAGAATTCGATGGAATTCAGGAAGTTTTTGGAATCT TGTGATTTTATAAAGGCTAGCACACAGTGGCGAAAAGTTCAAGACCGCTTAGAGGCTGATGAAAGATGTTCTCGTCTTGAGAAAATTGATCGCTTGGAAA TATTCCAAGATTATTTACTTGATTTAGCAAAAGAAGAAGAAGAGCAAAAGAAGATACAAAAGGAAGAATTGAGAAAGACAGAACGTAAAAACCGTGATGA GTTTCGCAAATTGATGGAAGAACATATTGCTGCAGGCGTTCTTACAGCAAAAACTAACTGGCGTGATTATCATTCGAAGGTAAAAGATTTGCCTGCTTAT GTAGCTGCGGCATCAAATACCTCAGGTTCAATTCCAAAAGATTTGTTTGAAGATGTTGTTGAAGAGCTAGAGAAACAATATAATGAAGAGAAGAGTCGAG TAAAAGATGCAGTGAAGTTGGCAAAGATCACTTTGTCTTCAACCTGGAATTTAGAGGACTTCAAATCAACCTTATCAAAAGACATCAGCTCTCCACCTGT ATCTGAGTTCAACTTAAAACTAGTGTTTGATGAGCTACTGGAACGGGCAAAGGAGAAGGAGGAAAAAGAGGCTAAGAAGCGTAAACGGCTTGCAGATGAT TTCTTTCATCTACTAAGTTCTATTAAGGACATTACTGCATCTTCAAAGTGGGAGGACTACAGACCACTTATCGAAGATAGTCAAG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_78719; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_177427
| Blastp | Pre-mRNA-processing protein 40A from Arabidopsis with 59.53% of identity |
|---|---|
| Blastx | Pre-mRNA-processing protein 40A from Arabidopsis with 52.78% of identity |
| Eggnog | PRP40 pre-mRNA processing factor 40 homolog(COG5104) |
| Kegg | Link to kegg annotations (AT1G44910) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428120.1) |
| Pfam | FF domain (PF01846.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |