Ll_transcript_177091

• Id Trinity: FTRINITY_DN58638_c0_g1_i11
• Name Transcript: Ll_transcript_177091
• Sequence: GAAAGAGATGAGAAATTATGCCCCAAAGTTGTGCTGCCCCATAGTAGTGTTGTGAATCAGTTGAGGCATCGACATGGCGGGCATAACCACCACCACCACC ACACTCCTCCTCCACTCTCAAATCAACAAACCCTCTCCTCTCTCTTCTTCTCACTCCAAGCTTTTCGGTTTTACCTTCTCTATCCCCAAATCCCACTCTT CTGTCTCCCTCACCTCCGTTAACGTTACCTCCCGATATGGCGGCGGCGGCGGCGGTTCCCGCAATTTCGACTACAGGCGCAAGAATAACGACGATGACGA TGATGAAGAAGCTCTTGACATCTCATCCCTTAGGTCAGGTACCGTTAGGCTTATTGATCAAGCTCAGAATATGGTTGGAGTAGTGTCTAGGAGCCAAGCC ATTCAAATGGCTGAAGATGCTGAACTTGATTTGGTCATTGTATCCCCAGATGCAGATCCTCCTGTTGTTAGAATAATGGATTACAGCAAATATAAATATG AAATTCAGAAGAAGAAAAGAGGACAGCAGAAGAAAAGTGCCGCTAGTCGGATGGATTTGAAGGAGCTCAAGATGGGGTAACGTCCTAGCCTAGGAGCCTA ACTCTTCCTTCCTTATTTTTATTATTTCAATGACAATAACATGTGAAAAGAAAGTTCTGGATTCTTGTTTCTTCAGAATTCCTAATTTGGTTTCCTTATT TTTGGTTAGATCTGAGATTTATTTAAAATACTAGAACCGACATTTCTGGGCTCATTGGCATCCTAATCTTATTTGAGTGCTGAATTGGTATTACTGACCA AATATTGCTTTGATTATTAATATTTTCGTACATGAATGGTCAGAATTGTGAACAAGTAGGTTATTGTTACACAATTGATTCAGGTTAATTATAGTTTCCC CTGAAAGGCATTAGCTGTATCTGCACCGGTTATTTTTCCCATTACTTTCAAGAAACTAGAAGAGATTAGAAAGAAATTAGCTGTATATGTTAAAAGCTCA TTTTGTGGTTGAAAGCCCCGTTCTTGGTTGTGGACTTGGGAATTACGATCAATTTGGACAGCATGTGCATCAAGGGTAGTTTAGGTCTGCTGCTCATACA CGACAAACATAGATAGACCTAAAAGTACTGTATCTCTTTGAAGCATAGAACTTATGCTATGATTCACTTTTTCTTCTTAAGTAACATAAACTCAATTTGA GTAGCAGGAGTGATTGCGATTTTTGAGCTGGGGTTAGTTTTTGAGTTTTAGTTATGATAGTTTATTTTTACTAGAGTATGTGTCTGTGACTTATTTTTAG TGACTTCTTTGAACTTTCATGAACAGATACAACATAGATCAACATGATTATTCAGTGCGTTTGAGAGCTGCTCAGAAGTTTTTGAAAGATGGTGACAAGG TTAAGATCATAGTGAACCTCAAAGGCCGTGAAAATGAATTCAGGAATATTGCTACTGAACTTCTTAGACGTTTCCAGAATGATGTTGGGGAGCTTGGAAC AGAGGAAGCTAAAAACTTCCGCGACAGGAACATCTTCATAATCATGGTTCCAAATAAAGCTACTCAACAGAAAGCTCAAGAACCACCAAAGAAAAAAGAC AAGTCAGAAGCAGATGAAGTTTCCGTCAGTGTCCAAACTTAGCATTACTTAAACTTTGCCTCGTGTTTCTAATAGTGGAATGATGGATTGTGGTTAACTT ATGTTCATGGTCAATGTTAGAATTTCCCTGTGTTGTATAGCATATAAGCATTCTTCCCAAAAACTAAAGATGAAGGAACAAAAACCCAACTTTTCATAGA AGGTTAGGACTTGATGCTGATTAAATTTTCGAAGTTGACGCAGCTATTCGAATCCAATGCATGTCAAATTGGTGACTATTACCAGTTTCAGTACCTTAGT CAAGAAGTATATTGCCCAAATAAAGGCATTGATAGGAAAACTATAAATTATGGGGCATATATGGCCTGATATGTTAGGGGAACATGCATTCCCTGTTTTG GATGCTTCTGATATATTTCTTCTTGGACTCAAAGTTGTACTGACTTCATCAAACGATGTTGAGAGGCTGCAAGTTGCATACCTAACTATGTGAAAGTAGC TTAGTTTTGAAGAATGCTATCATCTTACATGTTTTCTGAAATCAACAAGTTATATTTTTTTTTTTGCTATTTTTTAATATCCTGCTTTTATTACGGGAGA GGAATCTGATTCAATTTTTGATGATAAGAATACATCACGTTCGTTATATGGTGGTTGAACGTGTGAAGTTGCTGAGTAACGTTCATTATACATGACGTTA ATACTTGTATGTAAAGTAAATTATGACATAAACTTAGAAATATATGTATTATCAGGTATTTTATAATGGTAATTTTTTCATTAACAACAAATTTATAGTT TGGTAACAAGATGGTGAAAAGAAAAGGTTGTAAGGTGGAAGAAAGGCACAAAAATTGGCCCAATCCAAAATGAACATTAATGGGTTAGGTCCTCTTCGTA CAAAGTCGTTGGACGGTTGGTTACTTTAACTCATTCTTCATCAATTTGAATCTGTGTCTTTCTCTCAGTTCAAAACTGCATTGTTACAAAATCATTCACT GTATTCTATTCTATTCATCGGTGGCGATGGGGAACACATCGTCGATGCTGACTCAGTACGACATTGAAGAGGTTCAACAGAATTGCAAACACGCATTTAC TCAACAAGAGATAGTATCTCTGTACCAACGATTCTGTCAACTAGATCGTAACAAGTGCGGTTTCATTTCTTCCGATGAGTTCATGTCCATTCCCGAATTC GCAGTTAATCCTCTTTCACACAGTTTGTTGACAATGCTCGATGGTTTCAATTTCAAAGAATTTGTTGCCTTTTTGTCTACTTTTAGTTCCCGTGCCTCTC TACAACACAAAATTGAATTCATTTTCAAGGTATATGATTCCGACTGCAACGGGAAAGTCACGTTCGATGATATGTCGAGGGTTTTGCGCGATTTGTCTGG ACAGTTCATGTCACAACAACAAAGAGAGGAAGTTTTGGCACAGGTCCTTGAGGATGCAGGCTATAACAAGGACTCTTTTTTAGTCTTGTCTGACTTCATG AAGATTTTTGGCAATTCGGAATTGAAGATGGAAGCTGAGATTCCTGTGGATTAGAATGCTGGTGACAATTGCCCCAGAGTATAAAAGTCACTGTCCTGAT TTCCTAGATTATTTACTGAGTTCCCACTCACTGTTATATAGATGCTATAATTGTTTACGAGTCCATTCAGCATTGTTTATTTGTTTCTGGAAAAATGTTT TAAGTAAATATATGAGGTTTTTGGTGTGGCATCTATTGAGTCTCGTTATGAAGTTTGAATGCTTGATGTTTTTCTTATCTTACTTTTTTTAACTAGATTT GGAAGTTGTATTTCATGTACTGACATGGGTTATTGAAATAAGTTCCTACGTGTTGTCCCCC
• Tissue: flowers
• Gene name: LI_gene_78803;
• Additional information: details;

Expression of Ll_transcript_177091

FPKM

• FPAB: 0
• FPNAB: 1.8
• LF1: 3.5
• LF2: 2.7
• LF3: 3.8
• LF4: 4
• UF1: 4.4
• UF2: 3.1
• UF3: 3
• UF4: 2.8

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_177091

• Blastp: Translation initiation factor IF3-4, chloroplastic from Arabidopsis with 51.41% of identity
• Blastx: Translation initiation factor IF3-2, chloroplastic from Arabidopsis with 78.26% of identity
• Eggnog: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (By similarity)(COG0290)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453680.1)
• Pfam: Translation initiation factor IF-3, N-terminal domain (PF05198.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;