| Id Trinity | FTRINITY_DN58638_c0_g1_i25 |
|---|---|
| Name Transcript | Ll_transcript_177106 |
| Sequence | GAAAGAGATGAGAAATTATGCCCCAAAGTTGTGCTGCCCCATAGTAGTGTTGTGAATCAGTTGAGGCATCGACATGGCGGGCATAACCACCACCACCACC ACACTCCTCCTCCACTCTCAAATCAACAAACCCTCTCCTCTCTCTTCTTCTCACTCCAAGCTTTTCGGTTTTACCTTCTCTATCCCCAAATCCCACTCTT CTGTCTCCCTCACCTCCGTTAACGTTACCTCCCGATATGGCGGCGGCGGCGGCGGTTCCCGCAATTTCGACTACAGGCGCAAGAATAACGACGATGACGA TGATGAAGAAGCTCTTGACATCTCATCCCTTAGGTCAGGTACCGTTAGGCTTATTGATCAAGCTCAGAATATGGTTGGAGTAGTGTCTAGGAGCCAAGCC ATTCAAATGGCTGAAGATGCTGAACTTGATTTGGTCATTGTATCCCCAGATGCAGATCCTCCTGTTGTTAGAATAATGGATTACAGCAAATATAAATATG AAATTCAGAAGAAGAAAAGAGGACAGCAGAAGAAAAGTGCCGCTAGTCGGATGGATTTGAAGGAGCTCAAGATGGGGTAACGTCCTAGCCTAGGAGCCTA ACTCTTCCTTCCTTATTTTTATTATTTCAATGACAATAACATGTGAAAAGAAAGTTCTGGATTCTTGTTTCTTCAGAATTCCTAATTTGGTTTCCTTATT TTTGGTTAGATCTGAGATTTATTTAAAATACTAGAACCGACATTTCTGGGCTCATTGGCATCCTAATCTTATTTGAGTGCTGAATTGGTATTACTGACCA AATATTGCTTTGATTATTAATATTTTCGTACATGAATGGTCAGAATTGTGAACAAGTAGGTTATTGTTACACAATTGATTCAGGTTAATTATAGTTTCCC CTGAAAGGCATTAGCTGTATCTGCACCGGTTATTTTTCCCATTACTTTCAAGAAACTAGAAGAGATTAGAAAGAAATTAGCTGTATATGTTAAAAGCTCA TTTTGTGGTTGAAAGCCCCGTTCTTGGTTGTGGACTTGGGAATTACGATCAATTTGGACAGCATGTGCATCAAGGGTAGTTTAGGTCTGCTGCTCATACA CGACAAACATAGATAGACCTAAAAGTACTGTATCTCTTTGAAGCATAGAACTTATGCTATGATTCACTTTTTCTTCTTAAGTAACATAAACTCAATTTGA GTAGCAGGAGTGATTGCGATTTTTGAGCTGGGGTTAGTTTTTGAGTTTTAGTTATGATAGTTTATTTTTACTAGAGTATGTGTCTGTGACTTATTTTTAG TGACTTCTTTGAACTTTCATGAACAGATACAACATAGATCAACATGATTATTCAGTGCGTTTGAGAGCTGCTCAGAAGTTTTTGAAAGATGGTGACAAGG TTAAGATCATAGTGAACCTCAAAGGCCGTGAAAATGAATTCAGGAATATTGCTACTGAACTTCTTAGACGTTTCCAGAATGATGTTGGGGAGGTATGTAT TGCCACTTCGCTATATTATGATTATTTAACATCAGATTTCTTAAGCATTTAAAACTTTGCAATTTGTCCCTGAGAGATAGGTCAGTTGATTAAGTTGCAG GATATGGATTGTGTGTGCATGGGTTGAAAACCCTGCAGGTGTATTCCACCCATTTCCCATTCATTTCCCTGCTCCCCTGTAAGGTCTCCTTCCAGCATGA CCCCAGAAAAAAAACTGCAAGAACGAGAGAGAAATTGGTCAATGAGAAAACCAGGTCACGGAGTGTTATAATAGTGATTTTGTGTTATACTCATGCTTGG TACACCTTAAAACTCTTCAATCACCTCTTCATTTAATTTTTCTATTCAGAATATCAAACTTCGTTTGTGCATTGAATTCATTTACTATCACCCCGAGCTG ATTTCTGATTTTACTATCATTGGAGACATTTCATTCTATTGCCTATTTAAATTTTATATTCAACCACACTTGGGTAATGTGCAGCTTGGAACAGAGGAAG CTAAAAACTTCCGCGACAGGAACATCTTCATAATCATGGTTCCAAATAAAGCTACTCAACAGAAAGCTCAAGAACCACCAAAGAAAAAAGACAAGTCAGA AGCAGATGAAGTTTCCGTCAGTGTCCAAACTTAGCATTACTTAAACTTTGCCTCGTGTTTCTAATAGTGGAATGATGGATTGTGGTTAACTTATGTTCAT GGTCAATGTTAGAATTTCCCTGTGTTGTATAGCATATAAGCATTCTTCCCAAAAACTAAAGATGAAGGAACAAAAACCCAACTTTTCATAGAAGGTTAGG ACTTGATGCTGATTAAATTTTCGAAGTTGACGCAGCTATTCGAATCCAATGCATGTCAAATTGGTGACTATTACCAGTTTCAGTACCTTAGTCAAGAAGT ATATTGCCCAAATAAAGGCATTGATAGGAAAACTATAAATTATGGGGCATATATGGCCTGATATGTTAGGGGAACATGCATTCCCTGTTTTGGATGCTTC TGATATATTTCTTCTTGGACTCAAAGTTGTACTGACTTCATCAAACGATGTTGAGAGGCTGCAAGTTGCATACCTAACTATGTGAAAGTAGCTTAGTTTT GAAGAATGCTATCATCTTACATGTTTTCTGAAATCAACAAGTTATATTTTTTTTTTTGCTATTTTTTAATATCCTGCTTTTATTACGGGAGAGGAATCTG ATTCAATTTTTGATGATAAGAATACATCACGTTCGTTATATGGTGGTTGAACGTGTGAAGTTGCTGAGTAACGTTCATTATACATGACGTTAATACTTGT ATGTAAAGTAAATTATGACATAAACTTAGAAATATATGTATTATCAGGTATTTTATAATGGTAATTTTTTCATTAACAACAAATTTATAGTTTGGTAACA AGATGGTGAAAAGAAAAGGTTGTAAGGTGGAAGAAAGGCACAAAAATTGGCCCAATCCAAAATGAACATTAATGGGTTAGGTCCTCTTCGTACAAAGTCG TTGGACGGTTGGTTACTTTAACTCATTCTTCATCAATTTGAATCTGTGTCTTTCTCTCAGTTCAAAACTGCATTGTTACAAAATCATTCACTGTATTCTA TTCTATTCATCGGTGGCGATGGGGAACACATCGTCGATGCTGACTCAGTACGACATTGAAGAGGTTCAACAGAATTGCAAACACGCATTTACTCAACAAG AGATAGTATCTCTGTACCAACGATTCTGTCAACTAGATCGTAACAAGTGCGGTTTCATTTCTTCCGATGAGTTCATGTCCATTCCCGAATTCGCAGTTAA TCCTCTTTCACACAGTTTGTTGACAATGCTCGATGGTTTCAATTTCAAAGAATTTGTTGCCTTTTTGTCTACTTTTAGTTCCCGTGCCTCTCTACAACAC AAAATTGAATTCATTTTCAAGGTATATGATTCCGACTGCAACGGGAAAGTCACGTTCGATGATATGTCGAGGGTTTTGCGCGATTTGTCTGGACAGTTCA TGTCACAACAACAAAGAGAGGAAGTTTTGGCACAGGTCCTTGAGGATGCAGGCTATAACAAGGACTCTTTTTTAGTCTTGTCTGACTTCATGAAGATTTT TGGCAATTCGGAATTGAAGATGGAAGCTGAGATTCCTGTGGATTAGAATGCTGGTGACAATTGCCCCAGAGTATAAAAGTCACTGTCCTGATTTCCTAGA TTATTTACTGAGTTCCCACTCACTGTTATATAGATGCTATAATTGTTTACGAGTCCATTCAGCATTGTTTATTTGTTTCTGGAAAAATGTTTTAAGTAAA TATATGAGGTTTTTGGTGTGGCATCTATTGAGTCTCGTTATGAAGTTTGAATGCTTGATGTTTTTCTTATCTTACTTTTTTTAACTAGATTTGGAAGTTG TATTTCATGTACTGACATGGGTTATTGAAATAAGTTCCTACGTGTTGTCCCCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_78803; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_177106
| Blastp | Translation initiation factor IF3-4, chloroplastic from Arabidopsis with 51.41% of identity |
|---|---|
| Blastx | Translation initiation factor IF3-2, chloroplastic from Arabidopsis with 68.13% of identity |
| Eggnog | IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (By similarity)(COG0290) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453680.1) |
| Pfam | Translation initiation factor IF-3, N-terminal domain (PF05198.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |