| Id Trinity | FTRINITY_DN58638_c0_g1_i29 |
|---|---|
| Name Transcript | Ll_transcript_177110 |
| Sequence | GAAAGAGATGAGAAATTATGCCCCAAAGTTGTGCTGCCCCATAGTAGTGTTGTGAATCAGTTGAGGCATCGACATGGCGGGCATAACCACCACCACCACC ACACTCCTCCTCCACTCTCAAATCAACAAACCCTCTCCTCTCTCTTCTTCTCACTCCAAGCTTTTCGGTTTTACCTTCTCTATCCCCAAATCCCACTCTT CTGTCTCCCTCACCTCCGTTAACGTTACCTCCCGATATGGCGGCGGCGGCGGCGGTTCCCGCAATTTCGACTACAGGCGCAAGAATAACGACGATGACGA TGATGAAGAAGCTCTTGACATCTCATCCCTTAGGTCAGGTACCGTTAGGCTTATTGATCAAGCTCAGAATATGGTTGGAGTAGTGTCTAGGAGCCAAGCC ATTCAAATGGCTGAAGATGCTGAACTTGATTTGGTCATTGTATCCCCAGATGCAGATCCTCCTGTTGTTAGAATAATGGATTACAGCAAATATAAATATG AAATTCAGAAGAAGAAAAGAGGACAGCAGAAGAAAAGTGCCGCTAGTCGGATGGATTTGAAGGAGCTCAAGATGGGATACAACATAGATCAACATGATTA TTCAGTGCGTTTGAGAGCTGCTCAGAAGTTTTTGAAAGATGGTGACAAGGTTAAGATCATAGTGAACCTCAAAGGCCGTGAAAATGAATTCAGGAATATT GCTACTGAACTTCTTAGACGTTTCCAGAATGATGTTGGGGAGCTTGGAACAGAGGAAGCTAAAAACTTCCGCGACAGGAACATCTTCATAATCATGGTTC CAAATAAAGCTACTCAACAGAAAGCTCAAGAACCACCAAAGAAAAAAGACAAGTCAGAAGCAGATGAAGTTTCCGTCAGTGTCCAAACTTAGCATTACTT AAACTTTGCCTCGTGTTTCTAATAGTGGAATGATGGATTGTGGTTAACTTATGTTCATGGTCAATGTTAGAATTTCCCTGTGTTGTATAGCATATAAGCA TTCTTCCCAAAAACTAAAGATGAAGGAACAAAAACCCAACTTTTCATAGAAGGTTAGGACTTGATGCTGATTAAATTTTCGAAGTTGACGCAGCTATTCG AATCCAATGCATGTCAAATTGGTGACTATTACCAGTTTCAGTACCTTAGTCAAGAAGTATATTGCCCAAATAAAGGCATTGATAGGAAAACTATAAATTA TGGGGCATATATGGCCTGATATGTTAGGGGAACATGCATTCCCTGTTTTGGATGCTTCTGATATATTTCTTCTTGGACTCAAAGTTGTACTGACTTCATC AAACGATGTTGAGAGGCTGCAAGTTGCATACCTAACTATGTGAAAGTAGCTTAGTTTTGAAGAATGCTATCATCTTACATGTTTTCTGAAATCAACAAGT TATATTTTTTTTTTTGCTATTTTTTAATATCCTGCTTTTATTACGGGAGAGGAATCTGATTCAATTTTTGATGATAAGAATACATCACGTTCGTTATATG GTGGTTGAACGTGTGAAGTTGCTGAGTAACGTTCATTATACATGACGTTAATACTTGTATGTAAAGTAAATTATGACATAAACTTAGAAATATATGTATT ATCAGGTATTTTATAATGGTAATTTTTTCATTAACAACAAATTTATAGTTTGGTAACAAGATGGTGAAAAGAAAAGGTTGTAAGGTGGAAGAAAGGCACA AAAATTGGCCCAATCCAAAATGAACATTAATGGGTTAGGTCCTCTTCGTACAAAGTCGTTGGACGGTTGGTTACTTTAACTCATTCTTCATCAATTTGAA TCTGTGTCTTTCTCTCAGTTCAAAACTGCATTGTTACAAAATCATTCACTGTATTCTATTCTATTCATCGGTGGCGATGGGGAACACATCGTCGATGCTG ACTCAGTACGACATTGAAGAGGTTCAACAGAATTGCAAACACGCAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_78803; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_177110
| Blastp | Translation initiation factor IF3-2, chloroplastic from Arabidopsis with 61.3% of identity |
|---|---|
| Blastx | Translation initiation factor IF3-2, chloroplastic from Arabidopsis with 73.22% of identity |
| Eggnog | IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (By similarity)(COG0290) |
| Kegg | Link to kegg annotations (AT2G24060) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453667.1) |
| Pfam | Translation initiation factor IF-3, N-terminal domain (PF05198.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |