| Id Trinity | FTRINITY_DN58652_c2_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_179257 |
| Sequence | CTCTTTCAAGAACAGAAATTGCCACAAGGTCTCATAAAAGCAATAAAGTTGGATGTCTTAAATGAGGCGGATATAGATAAAATCGCTGCTTTGGAGATAA ATGCAGCCGGGCAGGTCAACTGTTCTGACCTGGGACTCCCAAATCTATCTTCCGAGTGCACAACATGTGGCGGTAAATCTTCGGATAAAAATTCTTGTGA AGGTCATTATGGAGTAATTAAATTTCCTTTTGTCATACTCCATCCATATTTTATGTCAGAGATTGCAAAAATCTTGAACAAAATTTGCCCTGGATGTAAA TCTATTCGACGAGAATTACAGAACAAGGCTGCTCAATTACTCTCTGGATTCAAGCAGTTTAACGGTTGCAAATATTGTTCTGGAAATTCTATGGTTCGCT ATCCAACAATGAAATTTAGAGTTTCCTCAAATGACCTCTATAGAAGAACTGCAATTATAGCTGAGGTTAATGATAAGGCTCCAAAGAAGAAGTCTTTGGG TCTAGGATTGCCTGATGATTATTGGGATATTATTCCTGTAGATGCTCAACAAGAAGAAAGTTGTATAAAATCAAATAGAAGGGTTTTATCACCTGCCCAG GTTTGCTCTTTGTTGACTGATGTTGATCTAAACTTTATTGAAAAATTTGTTCCGCGAAAGGATTTGCTTTGTCTCAAGTACTTCCCAGTGACACCAAATT GCCATCGTGTGACAGAGTTTGCACATGCATTTTGTAATGGAAGCCGGTTGAGTTTTGATGACAGGACCAGAAATTGCAAGAAGTTGGTTGATTTTAGGGG TACAGCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCATGAGGATCTCTAAGCTAAATCCTGACAAAACACCAAGTAATAATATTTTTGCCGAGATTCAG AAAAGAAGAGTTGGTGAAAATGCTTGCAATTCATCTGGTTTGAGATGGATGAAAGATGTGGTTCTTGGAAAACGCAATAGTAGTTCATTCCGTACCGTGG TTGTCGGTGATCCAGACCTTGAGCTTAGTGAGGTTGGATTACCTTGTCAGATTGCAGAAAGTTTGGAGGTTTGTGAACATGTGAACAGGCAGAATAGGGA AAAATTGTTTGATTGTTGTGAGTTACGCATGTTAGAGAAGGGACATATAAAGGTCTGCAGAAAGGGTAATCCAATTAAATTGTTTAAGAAGGAAGACCTT AAGATAGGAGACATATTTTATAGGCCCCTTACTAACGGGGATATAGTGCTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCCCTCTCAG TTAAGGTCCTTCCGATATCTAATGTGGTATCTATTAACCCAATCTGCTGTTCCCCACTGAGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCC ACAGTCAGTTGGTTCCAGAGTTGAGCTTAGTGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTGGAAATTTGCTTTCACTTTCTCAG GATAGTTTAACTGCTGCTTATTTGCTGATGGAAGATGGGGTTCTTTTGAATGTTTACGAAGTGCAGCAGCTTCAAATGTTTTGCCCTTACAAGCTAACAC TTCCTGCCGTTGTAAAAACTCCTTCAAGTAATTCCTCATTTTGGTGTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCAAAATTTGACTACTCTTTTCC TTCAGATGGTGTTTTTGTTAGAGATGGGGAGCTTATATCTTCTTCTGAAGCTTCTGGATGGTTACGCGATTCTGACTGCAATGTTTTACAGAGTCTTGTG GAACATTTTAAAGGGAAAACTCTAGACTTTTTGTATGCTGCACAGAAAGTTCTTTGTGAGTGGTTGACTATGACCGGTTTTAGTGTTTCTCTGTCAGACT TGTACCTCTCTTCTGACTCCTATGCACGGAAAAATATGATGGAGGAAATCGCCTATGGCTTACAGGAAGCAGAAGAGTCATGTAACTTCAAACAGTTATT AGTGGATGATTATTGTGATTTTCTTTCAGGAAATCTTCAAGATATTACTGTTAAAGTGGATCGTCTGAATCATGAGAGGCAAATATCCCTTTCTCTGTGT CAAGTGTCTGTTGATGCTTTTAGACAGGTTTTTCGAAGTATTCAAAGTTTAGCTGACAAATATGCATGCAAGAACAATACTTTCCTTGCTATGTTCAAGG CTGGAAGCAAGGGTAATTTACAGAAAATAGTGCAACATTCGATGTGTCTTGGCCTGCAGCATTCTCTGGTTCGTTTGTCATACAAGATTCCCCGCCGACT CTCTTGTGCTGCTTGGAATAGACAAAAGAAGCTTGATTCAACCAAGGGGTTTTTCGGAACTCCTCAACCTGTTCAATGTTACATTCCGTATGCTATGGTT GAAAACTCTTTTATGACTGGGCTAAATCCACTTGAATGTTTTGTTCATTCAGTGACAAACCGTGATAGCTCTTTCAGTGACAATGCAGATCTTCCTGGAA CGCTGACACGCAGACTTATGTTTTTTATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAACTTATACGGTAATCAAGTTATTCAATTTGCTTA TGATACCGACAAGGACTCATCTTCTGATAGATGTTACCAAGAATATACCATGGATGGTGAACCAGTTGGAGCCCTTTCTGCTTGTGCAATTTCTGAGGCT GCATACAGTGTTTTGGGTCAGCCAATCAGTCTGCTAGAAGCATCACCTCTGTTAAATTTAAAAAATGTTTTAGAATGTGGTTCAAAGAAAAGAGGCGGTG ATCAGACTGTGTCATTATTCTTGTCCAAGAAACTTGCTAAACATAGATATGGGTTTGAGTATGCAGCCTTGGAAATTAAGAATTATTTGGAAAGGATGAT GTTCTCAGACATTGTTTCTACGGTAATGATAATATTCACCCCACAGTCTTGCAGCCAAGAAAAGTATAGTCCTTGGGTTTGCCATTTCCATCTAGACAGG GAAATTGTAAAGAGAAGAAAATTAAAAATGCATTCTATCATTGACTCTCTTTACCAGAGGTGTGACTCACTAAGAAAAGAGTCAAAAGTCACTTTTCCCA ATTTGATTATATCAAGCAAGAAGTGTTCTGCAAATAAAAGGAAGGAGGGAGAAGATTGTGTCACTGTTACAATTGTTGAAAACTCTGGGGATTCTTTACA AGTCGATGCTGTTCGGGAGTTGATGTTACCTTTGCTTCTTGGAGCAGCTATAAAAGGATTTCTGGAGATCACAAAGGTTGATATTCTCTGGAGTAATCTG TCGGAAGTATCAAATTCTAGTAACGGTTCTTTAGGTGGTGAACTGTACTTGAAAGTTACTATCTCCAGTGGTGGTGGCAGTGGTAGATTCTGGGGATTTC TCATAAACTGTTGTCACAAGATAATGCATATGGTTGACTGGACACGAAGTCATCCCGATAACATTCATCATTTCTGCTCAGCCTATGGAATAAATGCAGG CTGGCAATATTTTCTCCGCAGTTTGGCATCTGCTACATCTGCTACTGGAAAGACAATCCTTCCTAAGCATCTGCGTCTTGTTGCCAATAGTCTGTCAGCT ACTGGGGAGTTTGTAGGATTAAATGCTAAAGGCATGAAAAGGCAAAGACAACATGCATCTGTCGCGTCACCCTTTGTGCAAGCATGCTTTTCTAATCCAG GTAGTTGTTTTATAAATGCTGCTAAGTCCGGAGTCAAGGACAACCTCCGAGGCAGCATAGATGCATTGGCTTGGGGGAATTGTCCGTCCATAGGGACAAG TGGACAATTTGATATCTTTTATGCAGATAAGGGACAAGAGATTGCTAAATCTGTAGATGTGTATAACCTACTTGAAGCAAGTATTGACCAACTGAATGAA AAGATTGATACCCCTGATGCTCACAACTATTCATTTGACAAATGCGGCTCTGGGTATAGATACAAAAATGGTGATTCTACCTTGAAACAGTTTAAGCAAG T BLAST |
| Tissue | flowers |
| Gene name | LI_gene_78904; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_179257
| Blastp | DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 52.47% of identity |
|---|---|
| Blastx | DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 51.61% of identity |
| Eggnog | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0086) |
| Kegg | Link to kegg annotations (AT1G63020) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445105.1) |
| Pfam | RNA polymerase Rpb1, domain 2 (PF00623.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |