| Id Trinity | FTRINITY_DN58663_c0_g1_i23 |
|---|---|
| Name Transcript | Ll_transcript_179216 |
| Sequence | CCTGATTTGCCATTACTACCTCTGTGATTCCACCTCCAAAAACAAAATCCACACAAAAGTGATTCTCCTCAACCACTATTTCACCACACCCCACAATTAT AATCCTACTCCTAATTAAAAAAAATTAAACTTTTATCTAGATTTTAATTCAAACAAAGTTAGCAGCATTTGGTGCGTAACCGTGCTGGTGAAGGGGAAAT TCTGAAGTCGTTGTTCTTTCATTTTCTGATCAACTTCTACGTCTCACTAACTTCGTCGTTGCAACTCGCTTGACTTCTTTTGAAGCAACCTTTTTCCTTT CTTATCCTATCCCCTCCCCATGTTGGACTTTTGTTATAATCAGCTGCTTCAACTTCCATTTGGGTCGTTCAATTTCACTTGAATTTTTGTTATTTGAATG AGAAATGGTGTGTTTGGGTTCTGAAATGGTTGAAAGGTTGGAACTTTGGTTTGTTAAGTGGAGGATTGCATTTGGGTGTTGTGTTTTTCTCTTGTTTCTT AGTCCAGTAATGGGTTTGAGACCTTTGAGGGACAAAACTGGTTCAATGGGCGATGAGGTTTGTCTGTGTTGATTATGGTAGTTGTGGATGCATATTGAGA AGTAGGACATGTTTTCTTCTTGTATTTTTGCTGTATTGTCTGGTTGCAATACCCTTGGCTTTGCTATGAGAACTTTCACTTTATAATTAGGCATTAGCCT TTGGTGTTACTGTTATTTTTCATTGATGAATTGATTTTTTAATGCTTGCGACCAAATTTGACCGATGAATAATTGATTAATTTGCATCTATTGACATTGC TTCTTTCAGTGGCTTTTTTCAAGAAGAGATGAAAGTGACTCAGGTCCATTTTCCGAATGGAACATAACCGGAACATATAGAGGGAGTTGGAAATTTTTAG ATACCACAAATGGCTCTTCCAAATTTCCAGACATCAGAAAAACAAATGGGAATTCTGTAATTGAGTTGGCCAGTACTCCCACAAAGATTACTGGTGTTCA TTATGTGCAGGGGGTAGTTTTGTTCCATGACGTGTTTGACAAAGAATACAATGTTGGTGGGTCCCAAATCAGAATAGAAGGTGTATATATATGGCCTTTT AGGCAGCTTCGAGTGGTAGCCAACAGTGGAAAAGAGGGAGTGTTGAATCCGGGTGATGATTATCTTTTATCTAATCCATACCATCTGCTTGGAATTTTCT CATCTCAAGTATTGCAAGAATCTTCACCAGATAGGATGTGGAGAAGAAAATCTTCTCCATTGCATGATATGGAAAAACATTGTAATGTTGAAATTGCTGC ACAGGTTTCACGCTTGCCATCATCAAAACATGGTACTTGAGTTCTCTCAGCGTATGAATATCTTCTGTTACTTCTTGCAATCCTTCTCTCTTCTTTGTAA TAAAATAACCTTTGGAAAAATGAAGTTATATTGGCCATTTTGCAGTGGCAACAGGAAGCTTCTAGTCACATTTAATAATGAAATTGATTATCCATGAATA TTAATATTAATTGCAGATAGAGGGTGAGCTTGGCACAAATGTAAGGCTATGTACATCTATCCTTCCCAGACTCCACTTAGTCGGAGCCTCATGCACCGGA TTGCCCTTGTTAATATTAATTGCAGATGGATTTTACTAGGAGTTATTGTTTTTTAAAGTTCATTCTTGTTATTGATGAAATTTTATATTTTATTGCTATG TTTTACTCATTTTTTTATATAAATTCTTATAGGAGGGGATTCTTTTCACTTGGAGGGGTTAATGGAGAGCCCGTCCGTGGAGGATGATGGAGAGTGCTTC TCTCCTTTACAGTTAAATGCATCATCTGTTAACGTAGAAGCTTACTACAGTAAAGCAGTGAACTACACATTGATGGTTACTTTTGTCTCTCTCTTGCAAG TTCTTCTATTGATTCGGCAGATGGAACACAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATTTTAATGGTTGGTCAGCAAGCTATAATGGATGCTTA TCTTTGCCTTTTACATCTCACTGCAGGAATAGTAGTTGAATCGTTGTTTAATGCCTTTGCAACCGCTGCATTCTTTAAATTTGTGGTTTTCTCAATATTT GAGATGAGATATATTCTTGTCGTCTGGAAGGCAAGTAGGCCTTTGAGTAACGGGGAAGGTTGGGAGACAATGAGGCGTGAGCTTTCAGCTTTATACAGGC GCTTATCTGGGATCCTCTTTGCAGGCATTCTGCTCATGTATGAATTCCATTATTATTTGAAACCTATTCTTCTTCTTGTATACTCCTTCTGGATACCTCA GATAATCACCAATGTTGTTCGCGATTCACGCAAGCCATTGCATCCTCATTATATCATAGGCATGACTGTTACTCGGCTAGCAATACCATTATATATTTTC TGTTGCCCTGACAACTTCATGCGGATAGAACCAGACCAGAGGTGGTGTGTCTATCTGACTGTATTTGTTGGACTTCAAGCTGCAATTCTTCTACTTCAGC ACTACCTTGGGTCCCGTTGCTTCATTCCTCACCAGATTCTACCCGAAAAATACAGCTATTATAGGCGGTTTGCTCAAGATACAAGTCATGCTGCAGATTG TGTTATTTGCATGACAACCATTGATCTTAGTCCTCCATCTAATGATTGCATGGTGACTCCATGCGATCATTTCTTCCACTCCGTCTGTTTGCAAAGATGG ATGGATATAAAGATGGAGTGCCCAACTTGTCGGCGCCCGCTTCCACCGGCCTGAAGAGATTTCCACTCTGTTCATACAAATAGGATCAACTGACCCTGCC CAACTTCATAATTTTGGTAATATGTTTAGTGTCATCCAAGATGTACATTGTCATATGCTTTTGCCCCTTGTGATTCATGCCTAAAGTTGAAATGAACAAT TATTTTTTGGTCATAAATCATATGGCAATGGTGATATGTGACATAATTTGATTTACAAAATCTGACTTTTTCTTATGTTTTTTACAGGTTGGGATAGAAT CAATATTCAGTACAATTCTTCTCATAATTGTATAATGGGGCATTGGTTTGTAGCTGATTATGTTAGTGATATTTTTTTTCTTCAAAATTTTAGTGGGTAG TACGTGCATTATAGATTATATAACATAATCTAATTTTTTGGCTTCAATTCCATCCTCTATGCATCAATTTATTTTCTAATTCCACACATAGTAGCCTTTG CCATGATGTGAAAAGTACATTGTGTAACATCCAAATAGCAATTATGAAGTTAAAAGTACTTATAAACACTATACTTTTTCGAAACATGCATTATCTAAAA C BLAST |
| Tissue | flowers |
| Gene name | LI_gene_78988; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_179216
| Blastp | Transmembrane E3 ubiquitin-protein ligase 1 from Saccharomyces with 28.98% of identity |
|---|---|
| Blastx | Transmembrane E3 ubiquitin-protein ligase 1 from Saccharomyces with 28.98% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (YKL034W) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464855.1) |
| Pfam | Ring finger domain (PF13639.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |