Ll_transcript_177616

• Id Trinity: FTRINITY_DN58675_c1_g3_i1
• Name Transcript: Ll_transcript_177616
• Sequence: AAGGGACAGAGTATCCGTTCAGGGCACTGCATCTTTTTAAAACTAGCATTGTGCCTTATCATCATTCATTCCTACTCAAACAACAACTTCACTTTCTTTC ACTAAACTCAACTTCCTATAAATTCTCCTTCATGTCTTCACTTCTCTCTCTTTACACTCCTCACACTTTCACTTCCGCTCCTTTCTCATTCAAATCTAAC CGCTTCTCCTCTCCCCGAACCACCGTCGTCGTTAGCGCCGCCGTTTCTTCTCCAGAGAAGCGAACCAGAAAGAAGAAGCAACTCATTAAGGACGATGACT CTTCATTGGAGAATAACCTTCGCTACACTTTCATGGAGAATCTCATGGACCGTGCTAGGAACCGTGACTCCGCTGCCGTCACCGCTCTTATCTACGACAT GATTGCCGCCGGTCTTAATCCTGGTCCTCGCTCCTTCCATGCTTTGGTTGTGTCTCATGTTCTTAACGGTGATGAACAAGCTGCGATGGATTCGTTGAGA AGAGAGTTGAGTTCGGGACTTCGACCAGTTCATGAGACATTTGTTGCATTGGCGAGGTTGTTTGGGTCTAAAGGGCGTGCTATCAGAGGTTTAGAGATAC TTGGAGCAATGGAAAAGCTTAATTATGATATTCGTCATGCTTGGCTAGTTCTAATTGGGGAACTTATTCGTAACAAGTATTTGGAAGATGCCAACCAAGT GTTCTTGAAGGGTGCCAAGGGTGGCCTCAAAGCTACTGACGAAATTTATGATACTTTAATTGAGGAAAACTGCAAAGTCGGAGATCATTCTAATGCCTTA GATATTTCATATGAGATGGAGGCAGCTGGCCGAATGGCAACCACATTCCACTTCAATTGTCTGCTCAGTTGTCAGGCTACCTGTGGAATACCTGAAATAG CTTTTACAACTTTTGAGAACATGCTTTATGGAGAAGATTTTATGAAGCCTGATACGGAGACTTACAATTGGGTTATTCAAGCATATACAAGAGCTGATTC TTATGACAGAGTACAAGATGTTGCTGAGTTACTTGGCATGATGATTGAACATCACAAGCGCATACAACCAAATGTGAAGACCCATGCGCTGTTAGTGGAG TGTTTTACCAAGTACTGTGTAGTACGAGAAGCTATAAGGCATTTCCGTGCCCTTAAAAACTTCGAAGGGGGTACAAAAGTTCTACATAATGAAGGGAACT ATGGAGATCCGCTTTCTCTGTATCTTCGGGCTTTATGCCGGGAAGGAAGGATTGTTGAAATGCTTGAGGCTTTAGAAGCCATGGCCAAAGATAACCAGAC AATCCCTCCAAGGGCAATGCTTTTGAGCAGAAAATACCGAACATTAGTGAGCTCATGGATTGAACCTTTACAAGAGGAGGCTGAACTTGGCTATGAGATT GATTACATTGCTAGATATGTCGCAGAGGGTGGCCTTACCGGAGAGCGCAAGCGGTGGGTGCCTAGAAGAGGTAAAACACCTCTAGATCCTGATGCAGATG GATTTATATACTCAAACCCAATGGAGACTTCCTTCAAACAAAGATGTCTCGAGGAGTTGAAGTTGCACCATAGAAAGCTTTTGAAGAACTTGCAGAATGA AGGACTTGCTGCTTTAGGGGATGGTGCATCTGAATCTGATTATATTAGAGTGCGGGAGAGGCTAAAAAAATTCATAAAGGGGCCTGAGCAGAATGCCTTA AAGCCCAAGGCTGCTAGTAAAATGCTTGTTTCTGAATTGAAGGAAGAACTAGAAGCACAAGGTTTACCTACTGATGGGACTAGAAATGTTCTTTACCAGC GTGTACAGAAAGCAAGGAGAATAAATCGATCTCGTGGTCGGCCCCTTTGGGTTCCACCAGTGGAAGAGGAGGAGGAAGAGGTGGATGAAGAAGTGGATGC ATTAATTTCGCGTATAAAGCTGCAGGAAGGAAATACAGAGTTCTGGAAGCGTCGCTTTTTAGGAGAAGACATAACTAGCAATAATGGAAAGTCATTGGAT GTTGGTAAATCAGAGTCCGATGAAGTTTCAGATGATGTCGATGCTGTGGAAGATGCTGCAAAAGGGGTTGAGGATGATGAGGCAGACGATGATGAGGACG ATGAGGAAGTAGAACAGGTAGAAGAGGAAGTAGAACCGGTAGACAACCAAGATGTAGACAGGGTAAAGCAGAAGGAAGTTGAAGCTAAAAAGCCCCTTCA AATGATTGGAGTTCAGTTGTTAAAAGATTCTAACCAACCCACCTCATCCAAAAAGTACAAAAAAACTTCTCGTCGATTGCTTGTTGAGGATGATGCTGAT GATGATTGGTTTCCTGATGACATATTTGAGGCATTCAAGGAACTGAGGAAGCGGAAAGTATTTGATGTATCAGATATGTATACCATAGCAGATGCTTGGG GATGGACGTGGGAGAGAGAACTGAAGAATAAACCTCCTCGTAGATGGTCACAGGAATGGGAAGTAGAGTTGGCAATCAAAGTTATGCAGAAGGTCATAGA ATTGGGAGGGACACCCACTATAGGAGATTGTGCCATAATCATACGTGCAGCTATAAGGGCGCCTTTACCTTCAGCTTTCTTGACAATTTTGCAGATAACT CATGGTCTTGGTTATAAGTTTGGGAGACCCCTTTATGATGAGATCATTTCTCTATGCCTTGATCTTGGGGAACTAGATGCTGCTGTTGCAGTAGTTGCAG ACTTGGAGACAACAGGGATCTTGGTTTCAGACGAGACCTTAGATAGGGTAATTTCAGCAAAACATAGGATTAACAATACCTCCAACGATAACATTATAGA TGTATGATTGTAAACTTTTACCTTCAAGTTGTGTGAGTAAAACTTGCATGGGCACATGAGCATAACTATTCCAAATCTTAAGGTAACTTTAGAATAATTA TAGTAAATGCATTGTTGTTATTTAAGATTATTACTTTTAATGTTGGTTCCTCCTTTTAGGCATTGTACCCATACACGATTTAGGCATGTTGTACTTTATT GCAAAGGAAAAGATAACGCATGTTGTTTAGTATCATCATTACACACTTCTGCAAATTTTGATTTATATATTTTTCTCCT
• Tissue: flowers
• Gene name: LI_gene_79104;
• Additional information: details;

Expression of Ll_transcript_177616

FPKM

• FPAB: 1.6
• FPNAB: 5.5
• LF1: 5.5
• LF2: 4.4
• LF3: 5
• LF4: 4.1
• UF1: 3.9
• UF2: 4.8
• UF3: 5.4
• UF4: 3.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_177616

• Blastp: Pentatricopeptide repeat-containing protein At4g20090 from Arabidopsis with 22.81% of identity
• Blastx: Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial from Arabidopsis with 24.52% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT4G20090)
• CantataDB: Link to cantataDB annotations (CNT0000541)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452207.1)
• Pfam: SAP domain (PF02037.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;