| Id Trinity | FTRINITY_DN58677_c1_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_179602 |
| Sequence | CATAGCTATCTTGTCACTCATCTTCCCTATCCCTATCCCTATCCCTATTCCTATTCCTATTCCTATTTTCTCACCTCTCATTAGCTGCACCGTTTCTTAG TTCAAACGCCAACACAAACCTTCATGAACAACAATCTCATCGCTTTTGAATAAGATGTTATGTACATGCCGACACATCCATAGTTGAATAATGGCTGTTG AGGCTTCTGATACACAACACATGTTAGATGGTTTATATGATGATGATGACGACGATGGGCCAGTAACTTTCAAAAGGAGCACAACATCTAAGGTAAATCA GACGTGTTCGGAAGTAAGGAAGTCAACTTCTCGTAACCATGATGGACAGTCATATAGACAGACTTCTGATGTACGTACTTCAAATGGCCAAGGTTCTGGC TTACAGAAGGGTAGGCGTGTCTCATCCGGTATGGTATCACCTACAAAATCTTCTAAAGCGCCTACTTCAATTGCCCAAGGTTCTAGTTTACCCAAGGATA AGATTGTACCATCTGGTATGGTGTCACCAAAGAAATCTTCTCAAGGCATCTCAAGAGCATCAAGTTCACACGTCAATGCCTATCCTGTGAAGTCACCTAT AGAAAATACAAAATCACCTTCTTTAGGTGATAAACCAAAGCCTTCTCCGGAATGGAAAACTCCAAGTGATGTTAAGGAGGAAAATAATTGTACCAGGCAC CTTACTGGAGACAATTGTGAAGACTCTGAGGATGAGGATAATAGAGCATTAAGTGTTAGGTTGAAGACGAACTCTAACAATGCTAACAGAGAAGCCGTTG CTGTTCTTAAGAAATCTTCTGAAGACTTCGATGACGATGAAGATGATATCCCTTTGTCAGCAAGGTTGAAGAATTCTAATTTGGGACCATCTAGTAGCAA GTATGATGATGCTGATCCGAAGAAACCAATTTCAAAAGTGCAGAAAGGACTAAAAGTTGGTTCCAGTGCTAGTATCAAACAGGAAAGGCCATCTACATTG TCAGTTAAGAGGCCACTGGATAACAAAGCTTCCTTGCACTCGTCAATTAAGAAGCCAAAACTCTCAAATCCAGATGCATTAAGCAGTGCTAAGCAAGTAC CAATGAAACCTGAGTCAAAGGTAGAGGATGATGATGATGTTCCTATTTCCCAAAGAATGAAGTTGTCCACATCATCTGATAAATCATCTTCCTTGAAGAA GTCGAAAAATGTCACTAACGTTAATAAGGCTGGTTCGTCTTTTAAGAAACAGGCCAAGACGTTCAAAAAATCTTCCAATAACTCAGAATATTCCAAATCT ACTAAACTTCTTCCTAGCTCTGGTGATGGTCAGAAAAAATGGACTACTTTAGTTCACAATGGTGTCATTTTCCCACCTCCGTATCAGCCCCATGGGGTAA ATATGCTCTATAAGGGGAAACCAGTGGTTTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTTTGCAGTCATGCGAGATACAGATTACATGCAGAAAGA TAAGTTCAAGGAAAATTTTTGGACCGACTGGCGCAAGTTGCTAGGAAAAAATCACGTTATCCAGAATTTGAATGATTGTGACTTTACTCCAATCTATGAT TGGTGCCAAAGTGAAAAGGAGAAGAAGAGACAGATGAGTTCGGAAGAGAAGAAGGCTCAGAAGGAGGAGAGAGCTAAACTAGAAGAGAAATACATGTGGG CTATTGTTGATGGTGTAAAAGAGAAGGTTTAAACTTGTCTCTCTCTCTTTCTCTCACCCTCTTTCCTCAAACCTATCCCCTCTTAAAAAGGGTTGGAAAT TTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAGCATCCTAAGATGGGAAAACTGAAAAAACGCATCTGTCCAAATGATATCACAATCAACA TTGGAAAGGATGCACCAATTCCTAACTGTCCTATTCCTGGAGAAAGTTGGAAGGATATAAGACATGACAACACAGTTACTTGGTTAGCCTTCTGGAGTGA CCCAATCAATCCAAAATTATTCAAATATGTGTTTCTGGCAGCTAGTAGTTCATTGAAGGGGCAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTG AAGGGTTATATAGGGAACATTCGGGCTGCATACACAAGAGATTTTACTTGCAGAGATATTACTAAACAGCAAATAGCTGTTGCTACTTATCTTATTGATA AACTAGCTCTAAGGGCTGGCAACGAGAAGGATGATGATGAAGCTGATACAGTTGGTTGTTGCACATTAAAAGTAGAGAATGTGACACCAGAAGCCCCAAA CAAGCTTCAGTTAAGCTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTGGAACTTCCTGTTTATAATGCAATTTTAAAGTTCCAAAAA GATAAACAACCTGGTGATGATCTTTTCGACATGCTGGACACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCCGGCCTTACAGCAAAAGTCTTCC GTACATTCAATGCATCTATCACATTGGATGATATGGTAAATAAGTCCTTTGACATGAGAAACCTGGAATTTATGTTGTTTCAAAAAAAGGACGAAAACAA TAAAATGAATCATGGTTCTATTATCTGCTACACTTTCCTTGTACTCAGTCTATTCTTGTTACTTTATGTGACTTCGAAGATGATTACCCCCTTCTTCCAA AAAAACATTTAAAAAATCGATACTATTGATGTTGAAAACTTCAACCACATTAATCATAAAATTGAAGTTCTACCTTGTACACTTCTTCCTTACAAAAATC TGCACCCAGACCTTTATTTGGATTTTTATGATGTTTTATTAAAAAAAAATTGATTTGCATAATGTTTTACCATAATTACTATTATTTTGCCTTTTATTTT GGACTTGCATATTTATTTTTCCTGGAGTTATGTGAAAACAGTTGAATAAGGATACTAAAGATGGAGATGTTGCGGAAAAGATTGTTGTTTATAATCATGC AAACAAACAGGTTGCAATCATTTGTAATCATCAACGTAGTGTTTCAAAATCTCACAGTGCACAAATGTCGAAGTTAAATGAAAAGATTGATGAACTTAAG GCTGTTCTAAAGGAGCTGAAAACAGATTTGGACAGGGCAAAGAAGGGAAAGTCCCCTTTAAAGAGTTCAGATGGAAAGACAAAAAAGAATTTAAATCCCG AAGCGTTAGAGAAAAAGATAGCTCAAACAACTACAAAAATTCAGAAAATGCAACGTGATATGAACGCAAAAGAAGATCTAAAAACCGTGGCATTAGGCAC GTCCAAGATAAACTACCTCGACCCCAGGATCACAGTGGCTTGGTGCAAACGACATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTTTTGGCAAAA TTTGCTTGGGCAATGGATGTAGATCCAGACTTCAGATTCTGAGATCTATGGATGGAGACATGCTGCTATGTGGCTGACAAAACATTTCTTTTATTCATTT ATTTTCCATAAAATAATTTTTCTGTTTCTCTTTGTCAATCTTAGCTGAAAATTATGTTGTATTTGTATGTACATCTAATCTAATTATGGGGTAAGTTGTC CCCTTGAGGAATGAAATCACAATTCAGGCAATAACATGTAAAATAGATTTAGAGCTAACAAAGATGATTTTGATTCAGTTGTTGTTAATACTATTCATTT GATGAATATCTTTGTACTAAACTCTACTAATGTTGCTTTTTTAAATTATTTATGTTTATGTTAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_79114; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_179602
| Blastp | DNA topoisomerase 1 alpha from Arabidopsis with 43.81% of identity |
|---|---|
| Blastx | DNA topoisomerase 1 beta from Arabidopsis with 80.63% of identity |
| Eggnog | Dna topoisomerase(COG3569) |
| Kegg | Link to kegg annotations (AT5G55300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019431101.1) |
| Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment (PF02919.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |