| Id Trinity | FTRINITY_DN58677_c1_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_179581 |
| Sequence | ATTTGGACGAGTTAAAACAACACAACTCACCCTAACTCGCTTCATTCCATTCCCTTTCTCTCTATTTTCTCTCTTTCTTTCAACTACTTCACCCTCTCCT CATTCATCACTCAGCTACATCTTCTTACACCTTCTCATTCTCATTCACACTTTTTTCGATTTTTGCATGTGATGTACATACCAACACTTTCATAGTTGGA TAATGGCTGTCGAGACTAATGATAAAACGAGTTTGCCACTTGATTTTGGTGATGACGATGGGCCAGTAACTTTTAAACGATATACATCATCCAAGAAAAA ACAGTTGCAATCCGAATTGACGAAGTCGACTTCTAATAGTCTTGACGGACAGTCAAATAGACAGAGTTCAAATGTGCCTTCTTCAAATGGCCAATCTTCT AGCACCCCAAAGGGTGATGTTGTCCCATCTGCTAAGGCATCAGCCGTGAAATCTCCTGTAGGAAACTCTAAAGCATCTAATTCACTTGTCAATCCTGCAT CTGTTAAGTTGCCTGTAGCAAATTCAAGATCACATTCACTAAATGATAAACCAAAGTCTGTTCCGGAACAAAAGGCGTCCATTGATATTAAGGAGGAATC AAAATTTATCAAACATTGTACTAAGGATTATGCTGAAGATTCAGAAGATGAGGAGGATAATAAACCATTAAGTGCTAGGTTGAAGGTGAACTCTAACATC GACAACAAAGCAACCCCGGTTGTTGTTAAGAAATCTTATGAAGACTCTGATGATGACGATGATATCCCTTTGTCAGCAAAGTTATTCCGGAATTCTAACG TCGGAACATCCAGTGGTAACTATGATGACCCTGATGAGAAGAAGCCTATTTCAAAAGTTCAGAAAGAGCGGCAAAATGGTTCCAGTGCTAGCAATAAACA GGGAAAGCCGTCTACAGTGCCAGCTAAGAGACCACTAGATAAAAGTAATTCTGTGCACTCTCCAGTTAAGAAGTCCAAGGTCTCAGATCCAGCTGCATCA ATCAAAACTAAACAAGTCTCTTTGAAATGTGAGCCGAAGGTGGATGATGACGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAGTCGGCTACTT CAGCTGATAAATCATCTTCCATAAATAAGAAGGCGGCTACATCAGCTGATAAATCATCTTCGATAAAGAAGAATTTGGCAAAGGTTACTAAAGTTAACAA GGCTGGTAAAACATCTTTTAAGAAACAGCCAAAGAAGTTAAAAAAATCAGGCAAGGGTTCAGATTATTCCAAATCTATGAAATTTCTTCCTGGTTCTGGC GATGGACAGAAAAAGTGGACTACTTTGGTTCACAATGGTGTCATTTTTCCTCCTCTTTACCAGCCCCATGGGGTAAAGATGCTCTATAAGGGGAAACCGG TTGATTTGACTCCTGATCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGATTACATGCAGAAAGATAAGTTCAAAGAGAATTTCTGGAA TGACTGGCGTAAGTTGCTAGGGAGAAATCATGTAATTCACAACTTGAAAGATTGTGACTTCACTCCAATCTATGATTGGCACCAAAGTGAAAAGGAAAAG AAGAAACAAATTACTACAGAAGAGAAGAAGGCCCTGAAGGAGGAGAAAATGAAACAGGAGGAGAAATTCATGTGGGCTATTGTTGACGGTGTTAAAGAGA AGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAGCATCCCAAGATGGGAAAGTTGAAACGACGCATTTGTCCAAGGGATAT CGTCATTAATATTGGAAAGGATGCCCCAGTTCCTGAATGTCCTATTCCTGGTGAAAGGTCTGATTTTTTCAAATATTTTTTTACTCTACTAAGTTGAAAG CCAACATTGTTCATTTTTAATTGAGGCGTGTCACATGTACCCTTGGCAGATGGAAGGAGATAAGACATGACAATACAGTTACATGGTTAGCGTACTGGAG TGACCCTATCAATCCAAAGTTATTCAAATATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGACAAAGCGACAAGGAAAAGTACGAGAAAGCTAGGATG TTGAAGGATTATATAGAGAACATTAGGGCTGCATACACAAAAGATTTTACAAATAAAGATATCACAAAGCAGCAGATAGCTGTTGCTACGTATCTTATTG ATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGCACATTAAAAGTAGAAAATGTAACAAGAGAAGCCCC CAACAAGTTGAAGTTCAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTCGAGCTTCCTGTTTATAATGCAATTTTAAAGTTCCAA AAAGAAAAAGGCCCTGGCGATGATCTTTTTGACATGCTGGATACAAGTAAATTAAATGCCCATCTGAAGGAACTCATGCCCGGACTAACAGCAAAAGTCT TCCGTACATTTAATGCATCTATCACATTGGATGACATGGTAAAACAGATTTGAAATGAAAATCCTGAAAGTCAGTTTTTTTGTTTTGTGGAGGGGGGATA AGTAGTATATATTCTCAACAACATCACTCATTTGTTTCTGCACAATTATATTTACTTCTGTATCTGTGCAGGTTCATCTTGTAACTTTTGTATACATCCA TATACAATCCTCTGCACAATTATAGAAAACGCAAACCACTCTAAGAATTTCACTTCATGAATTTTTAATGCAACCTGGAAATTACATATTGACATACCCA ACCCAAACATATATTTACTGTCTTATATATTTATTTTGATTTCTTGTAGCATGTTATAGATTGTAGACTTGTTTATTTAATTCTCCTCGGATTATATGAT AACAGCTGAATAAGGGAACTAAAGGTGGAGATGTTGGAGAAAAGATTGTTGTTTATCAGCATGCAAACAAACAGGTTGCAATCATTTGTAATCATCAACG TAGTGTTTCAAAATCTCACAGTGCACAAATGTCGAAGTTAAATGAAAAGATTGATGAACTTAAGGCTGTTCTAAAGGAGCTGAAAACAGATTTGGACAGG GCAAAGAAGGGAAAGTCCCCTTTAAAGAGTTCAGATGGAAAGACAAAACGGAACTTAAATCCTGAAGCACTAGAGAAAAAGATATCTCAAACCAATGCAA AAATCGAGAAAATGCAGCGTGATATGATGACTAAAGAAGACCTAAAAACTGTGGCATTAGGCACGTCCAAGATAAACTACCTTGACCCCAGGATTACAGT TGCTTGGTGCAAGCGGCATGAGGTCCCTATTGAAAAGATCTTCAACAAGTCACTGCTGGAAAAATTTAGTTGGGCAATGGATGTGGATCCTGACTTCAGA TTCTGAGATCTATGGAATGAAGGCTTGAAAACGTTTCCTTTTTACTCATTTCTTTTCTATAAAAAAAATATTTCTGTTATGTCAAATTAAGAGAAAATTG ATGTTGTAATTTCATCTAATCTATTTATGGGGTTGACCCTTTTCTCCATTGACCAGTTTTCTGTTTTTGAACAACCAACGATTCATGGATATGATTTCAA AATATTACCCATTGCAAAATGAGTTTAAGTTTTGTAGTTTCGTTCTTGCTTATTTTACTTTTTGCTTATTCTGTGATTGGTCCCAATGCCAGAAATGTTT CTTGGTTTTGTTTATTTTTAAAAACAAATTGTTGATGTTAATGTTAGGAATCAAAATGACAGGATCCAAATCTGAGGGGTTTATTTGCTTTGATTTGGTA ATACATGGCGTTTTCATTAAGGCCTATGATCCTACTTTTAAAAGGCACTTGAGTTTAACATCATCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_79114; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_179581
| Blastp | DNA topoisomerase 1 alpha from Arabidopsis with 52.68% of identity |
|---|---|
| Blastx | DNA topoisomerase 1 beta from Arabidopsis with 81.31% of identity |
| Eggnog | Dna topoisomerase(COG3569) |
| Kegg | Link to kegg annotations (AT5G55300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413101.1) |
| Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment (PF02919.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |