Ll_transcript_52327

• Id Trinity: FTRINITY_DN58804_c1_g4_i7
• Name Transcript: Ll_transcript_52327
• Sequence: GTAATGTTGGACCTTGAATGTGATGCCCTAATTTCGAAGATGTTTCAGCATTTCTTGAAGGAAATAAGGGAACATCACCCAGAGAATGTTTTTACATCCA TGGAAATAATTATGACCCTCGTTTTGGAGGAAAGTGAAGATATTTCCCTGGAATTACTCTCTCCACTCTTGGACAGTGTTAAGAAAGGCAATGAGGAAGT TTTCCCAATTGCTCAAAAATTGGGGGAGAGGGTGCTTGAAAGTTGTGCAACCAAGCTTAAACACTACTTATTGCAAGCTGTGAATAGCTTGGGTATATCT GTGGATGATTATAGTAAGATACTTGCCTCAATATGCCAAGATGCATCTGATAGCTTGGAGCAAAATGATGCATGTGTTACTAGAGAGCAGATGGAAGATG AGAGCAAATCAGCAAAACAGTTGCTGGAGGAGTCAAAGCAAACGGTTAAAGAGGATGAAACAGAAGTTTTACATTCTCATCAAGATAATGCTGTCAAAGA CATATCTCCCAAGTCACTCATGAGTAACGGTACTGCAAAGGTTGGAGAAGATTTTGCTTTAGCAGATTCGAAGTCCCCTAAGAAGCAAGAGAGTACTGAT CATTCTGATAAGTCCAAAGATTCGGATATATCTGGTCATGAGGAGACCAATGATTTGGACACTGAAAAGGTTGACAATAGGGAAGAAAATCCAGAACAAC CCTCTAAGAGGCGAGGAAGGAAATCTAGCTCTTCAACAAAATTGGCTGAACCTTTTGAGGGCCAAGTTGCTGCTGATGTGAAGGAAGATGAGAGAAGTCT TGACTCTGAAAATCACAGCAAAGATATTCCCAGTTTACTTAATGAGGACCATTCTGTTGAAGCAGGATCGTCACAGAATGACAAAGAGATTGATGCTAAG ATTTTATCTCCAGAAGCAGGGCATGATGAATCTGATGTTATTGGTTCTTCACCAGTTGAGAGCCTCCATGGCAGAAATCGTTCAAAGAAAATTGGACGTG CTAAAACAAAGGATGTCTCTTTGAAAGAAGTGACCACAGATGGTGTTTCAAAGAAGGTGACTGATGTAACAAGTGATTCTGAAGCCAAACCAGTCAAACA GTCTGTGAAAAAGGCACTTGGACAGAAGTCTGATGTGAAAAAAACTTCTGTGGTTGATTCAGACAAAAAAGAAATTGTGACTACAAGTGATACAGAGGCC AAAAAGCACTCTGCCAAGAAACCAGATAAAAGCAATAAAGGTGAGGTTGGATCCTCTTCAAAGCAGCCAGAGGAGAAGAAAAAGTTGGGGCGGGGGAAAG CTAGCTTTGAAAAAGCTGTAAAAAAATCTTCTGCTAAAAATATGGATGAGGAAATGGTGTCTCCTCCAAGGTCTGGTACAAAATCGACTAAAAATGAAAG TTTAGTGGAAACTCCCAAGACAAATGTGAAGAGGAAACACCCCTCAGGAACAGAAAATGAGTCAGATATCAAGGAATATGGTGAAAACCTTGTTGGTTTA CGAATTAAAGTTTGGTGGCCAGCGGATCGTGAGTTTTACAAAGGTGTTATTGATTCTTTTGATCCTGCCAACAAGAAGCACAAGGTTAATTATGATGATG GGGAAGTAGAAATATTACGTCTTAGAAAGGAAAAATGGAAGATCATTGAACCTGCTGATTCTGATTCAGATGGGGAAGAAGGAAGTGATCATGAAAGTCT TGACGCATCGGCTGATATGTATGTTCTCCATATTGTTGATGTTGTTTATCAGTAATATATCTTTTGGTTATATTGTTATCCTGTATTATTTGCATGTCTG TTTTCATGGTACATATATAGTGTTACATTGTTGTTTGTTTGTTACTGATTTGGTTGCTACTATTGTTTCAAAGAATGCTACCATTTTATATATGACCCCA AAACCTCGACCCACTATATATGTAAATATTTATTTTCGGAATGATAATATGCACATGTTTTAACTTGTATTTAATTTTTTTTGATATGATGTGTCCTATG GCTGAGTTCTCAATGAAATTCCGGAATATAGTTTCTTTTGTTGGTTCCAGATTCTCAGGTAGTTGTTGCTGTAATGTATATTTTGATGTTATATAAACGC TTTAGTTATGAAAGCTATAGAAATGTGAGAGAGATATGAATCATATTGCGGAATAAGCTTCAATGGAATGACACTCTTCACACACACAATTCATGATACA GTTTACAAGTCTGAGAAAGTGGGATCTATTTCCTAGACTAGTTCTGTTCACTGGTATCTGGATGAAAATGTGTAGTTCATTGACAATTTGTATCTTTGCA TCCGCTGAATGGCTGAAGTGATTGAGTTTTGTGGAGTTGAAAATGTAAATTGATTTATTGTGAAGAGCGTGTTAGTACATGTTTCATGTTTCCCCTTTGT CAAAGAAGATTCGATTGATATCTTCATTGGTGATTCTCTTCAATGCTGTGGCGTGGTGTTCTTTCTTGCTCTTTCTTTACTTATTTACATTGCATTATTC TATGATCATATTCAGGCCCCCAAAGAAGAAAGGGAAAACACGTGCTGGTGATTCAACTAATCAAAGAAAGATGGATGCTTCGTCCAAAAGGTTTGTGAAT ATTAATAATCAATTTCTGTGCTACTATTTGTTTGATATCTAAATATTCAACTTCAACTTTTAGTGCTGGAGCCGAAGTATCCAGTAAGTCAAAGAGTGCT TCCACGAAGTCTAGTGGTAAGTCCAAAGATGGCCGCACATCCAAAGATTCCAAGACTATTAGCAAATCTGAGGTTGAACGAGACAAAAAATCTAAGGATA ACACTCCGAGAAGTGCTGGCAGTAAATCTATTACTGCTGCACAAAAAATGACTGGCAAATCTAGAAACACTGATACTTCCAAGACAAGCAAAGCAAAGGA TGATGACAGTAGCACGCCAAAACCCTCTAAGTTCAAGGAAGAAACCCCAAAGAGTGGAAAATCCAAGCAAGAAACTCCGAAGGCTGTTGCTTCCAAGGGA AAAACCCCCAAAGGTGGTGGAAAATCTAATGGCAGTGGTAGCAGCAAGGTGAAATCTGGTTTATTGAAGAGAAAAGATTCAGAGAACGAGAACTCAGATG CTTCAGAAACAGAGGTGGAAGATAAAAAGGGTAATGCATCAAGTTCATCAAAGGCACAAGGAAGTGAGGCCAGGAGTGGAAAGAAGCGTAGGAAGTAGAT AAATTTTCTCGCTTCTGCTTATCACTGTACTCTTCTGCAGCATTTGGATTTTCCTTTCTCTGACCTGAGTCCTCAAGTAATGAAAACTAAGCCATGTGTT AAGGTATCTTGTCATAGTTTGTGGTGATTCCCTCATTGTTGCTAGTATTCTTATCCAAAGTTAGAGTAGTTAGTTGTAGCCTTGTAGGTCCTAGTTATAG TGTGGGATATTATGTTTAGTTCTTTATCTCTTGTTTCTAGATGGATTGCAGAAACATTTGTGTTGACAAGCTTCATAGAGATAGACAGGTTGATAACCTG CCATTGAATTAGCCGTGTTGTCAAGTGTGTACCCGGCTTTGTATTGAGTTGTGATGTAGCTGATGTTACAGCTGACAGCATGTTTGGTTTTAACTTATTC TATGAATGAAATGGAAGAAATGTGTCTGAGGCACTGAACCTAAACATTTTTGTCGTTAAGTAAACATTCCTAATGAGACGGGATATGATTTTGTACTTTC TGGCCCGTCAATATGATTTTTGTTGTGATAAATTTGTAGAGTAAATAAATACATAAAGGC
• Tissue: flowers
• Gene name: LI_gene_80254;
• Additional information: details;

Expression of Ll_transcript_52327

FPKM

• FPAB: 2
• FPNAB: 5.1
• LF1: 1.7
• LF2: 1.4
• LF3: 1.3
• LF4: 1.1
• UF1: 0.2
• UF2: 0.8
• UF3: 1.1
• UF4: 0.8

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_52327

• Blastp: DNA mismatch repair protein MSH6 from Arabidopsis with 40.91% of identity
• Blastx: Histone-lysine N-methyltransferase TRX1 from Oryza sativa with 51.92% of identity
• Eggnog: that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
• Kegg: Link to kegg annotations (AT4G02070)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019415125.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;