Ll_transcript_52117

• Id Trinity: FTRINITY_DN58822_c3_g1_i9
• Name Transcript: Ll_transcript_52117
• Sequence: CACAAACGGGTCGGGTATCTCTGGAATCTTCTGACCCATCATCTTCGATTTCGAGCACGTTCTTTCCCTTCTCTTATTATTTCACTATTTCTTCTTTCTC TCTCTGTTACGTTCTTCTGCAACTCCAAAACTCAAAACCTAATTCAATATCCATAGAGATATGGAGAATCAAACGAATCACGAAACCTCAGAGCAACCGA ATAATGAAACCGAAGAACAAGCTGAATTGCAGGAACACGATGAAGAAGATGATTCTAAGAAGGAAGAAGAAGAATTGGTTGCAAAAGTTAACAAGCTTAT GGATAAGATCACTGCTTCACCTGATAACCCTAAACCTACCGTTCTCCACGCTCTTGCCTCCATTCTTGAGACCCAGGAATCTCGGTACATGGAAGAGAAT GATCATTCTTCCTCAAGTAATGGACGTGCTGCTCACAGCATTGGCCGCCTCGGGAGTATTATCCGGGAAAATGATGAATTCTTCGAGTTAATATCGTCGA AGTTTCTATCAGAATCAAGATACTCAATTTCTGTTCAAGTTGCTTCTGCCAGACTTCTCCTATGCTGTTCCCTAACTTGGATTTATCCTCATGTTTTTGA AGAACCTGTAATAGAAAACATCAAAGACTGGGTGATGGATGAAAGTGCCAGAGTGTCTGCTGAAGATCAAAGTCTGAAGCATCATCCAAGGAAACGGGAA GCTTCTGATTCTGAAATGTTGAAAACCTATTCTACTGGACTCCTTGCTGTGTGTTTGATTGGTGGAGGTCAAGTGGTTGAAGATGTATTGACATCTGGTT TGTCAGCTAAGCTTATGCGTTATCTTCGTCTACGTGTGCTGGGAGACACAAGTAGCACTCAAAAAGATATTGGTCATTCAACAGAGGGTAGGCATGCCAC TGGGAATAGTTCACTGAGAAGTAGAGATGATGGTCGCAGTAGATTTCGCCACCTTATAGAAGCAAGTCGTTTAGATGATACAAGGATGATTGATGAGAGA TCTTTAGAAGACCAAATTCATGAAAGGGTTCCAGATAGAAACATTGGTGAACAAAATTTCCCAGATAATTCTTGGGTAGGTGGTGAACCACCTGATGGGC TGGGTGAAGATGCTGATATCTGCGAAGTAGATGCTGTTGGGGAGGATAGATGGCACAGTTTAGATGCACGTGATGGAAGGATAAAGCATGGTGAGCATGA TGACAATGTTAATGATTCTTCAAGGCGGCGTACTAAATGGGCAAGATCTCGGGGGAAAACACGGGTCAATGAGAGTACTATTGAAAGTGAACCTGTTTTG TCATCTCCTGGTTCTGGTAGTCGATTAGGACAGGGACGGAGTGTTCGAGATAGGAGCATATCAAGGAATGCTGATGCTAGGAAGGTGCCTGATTCTAAGA AGACTCATGTGCGGGCCACTACGGAGACTTCACTTTTGGAAAGAGAGGATAATGATGATTGTTTCCAGGAATGCCAGATTGGAAGTAAAGATATTTCTGA TCTTGTTCGGAAAGCTGTCCGAGCTGCTGAAGCTGAAGCCAGGTCAGCCAATGCACCCGAAGAAGCGGTCAAAGCAGCGGGTGATGCTGCTGCTGACCTT GTTAAAACTGCAGCTTCAGAGGAATTTAAATCAAGTAATGATGAAGAAGCAGCTGTTTTGGCTGCTTCAAGAGCTGCATCAACTGTTATTGATGCTGCAT CTGCTGTTGAACTTTCAAGGAGCTCCATTGGAATCAATTCTGAGACTGAGAGTGTGAGTTGCAGAGAAACAGACTCTGGTGAGGATCTTGAAGATTTCTT CATCCCAGATACACAATCACTTTCAAAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTCGGAGAATATGTAGAAGTCCTTGGCCCTGTGTTG CATGAGAAAGGGGTTGATGTGTGTCTTGCACTTCTGCAGCAGAATTCTAAACATCAGGAAGCATCAAAGGTTGCATTACTGCTACCTGATGTCATGAAGA TGATCTGTGCTTTGGCAGCTCATAGGAAATTTGCTGCTCTATTTGTTGACCGTGGGGGAATCCAAAAGCTGCTTGCTGTCCCTAGAATGACTCAAACGTT CTTTGGCCTCTCTTCTACTCTATTTACTATTGGTTCTCTTCAGGGGATAATGGAACGTGTTTGTGCTCTTCCATCGGATGTTGTTTATCATGTAGTTCAG TTGGCTCTCCAACTCATTGACTGCAACCAAGACCAAGCCCGAAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTCAGAGCAGTTCTTGATGCTT TCGATTCGCAAGATGGATTACAGAAACTACTAGGACTTCTAAATGATGCTGCTTTAGTAAGATCTGGAGTAAATTCTGGAGCCTTGGGCTTATCCAACAC AGGATCACTTCGAAATGATCGGTCCCCGGCAGAAGTTCTGACATCATCCGAGAAGCAGATAGCTTACCACACTTGTGTTGCTTTGCGGCAATATTTTAGA GCACATCTCCTTTTATTAGTGGATTCTATTCGTCCAAACAAAAACAATCGTAGTACTGCTAGGAATATTCCAAGTGTTAGGGCTGTGTACAAGCCTCTTG ACATTAGTAATGAGGCTATTGATGCAGTATTCCTACAACTGCAAAAAGATCGAAAGCTTGGTCCTGCATTTGTGAGAACTCGTTGGCCACCAGTTGAGAA GTTCATGGCATCCAATGGACATGTTACTATGTTGGAATTGTGTCAGGCCCCATCTGTGGAGCGTTATCTGCATGATTTGCTTCAGTTTGCGCTGGGTGTT CTGCATATTGTTACCTTGGTACCTAGCAGCCGTAAAGTGATTGTAAATACAACATTAAGCAATAACCGTGTTGCTATAGCAGTAATTTTGGATGCTGCAA ATATTGTTGGTAGTCATGTGGACCCTGAGATAATTCAGCCAGCATTAAATGTTTTAGTTAACCTCGTTTGCCCTCCACCTTCGATTAGCAATAAACCCAC TGTATTTACACAAGGGCAGCAGTTTCCTTCTGCCCAAATTACAAATGGTCCTCCCTCGGAGACTAGAGATAGAACTGCCCAATCCAGTCAGATTGATCCT AGGGAGAGGAATGGGGAAACCAGTACTGCAGTACTTAGTGCACAAAACGTAAATAGCAATCCACAAACTCCTGGTTCGACTACAGCTTCAGGATTGGTTG GCGACCGTAGAATATCTCTGGGAGCAGGAGCTGGTTCTGCTGGCCTTGCTGCACAACTGGAACAAGGATATCGCCAATCAAGAGAAGCTGTTCGGTCTAA TAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCACGCATATATTCACCTCCTGCTGCATTGGACTGTCTTCGTGCTCTAGCTTGTCGAGTCTTGCTT GGATTAGCCAGAGATGATACTATTGCACAGATATTGACAAAGCTTCAGGTTGGGAAAAAGCTTTCAGAATTAATTCGGGATTCTGGAAGCCAGACACCTG GAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCACAGGCTGCAATTGAGCTAATCGGGATAGTGACTAATTCTGGGCGTGCAAGTACTTTAGCTGCTAC TGATGCAGCTACTCCTACCTTAAGGCGCATAGAAAGAGCAGCAATAGCTGCTGCCACTCCTATTACCTATCATGCAAGGGAACTGCTGCTCCTAGTTCAT GAACATCTGCAGGCATCTGGATTGTCACATACCGCTTCAATGTTGCTCAAGGAGGCTCAGTTGACTCCTTTGCCCTCACTGATTGCTCCATCTTCTCTTG CGCAACAGCCTAACACACAGGAAGCTTCTTCAATACAAATTCAGTGGCCCTCTGGTCGTACTGCTGGGTTTCTCACTAACAAGTTAAAGATTAATGCAAG AGATGAGGAGCCTAGCTTGAAAATTGGATCTGTCTCTGCAAAGAAAAAATCACTGAGTTTTTCAGCATCTTTTGGTACTCATTCAAGACATCAACTTGTT GATTCTCTGCTGTCACCAGGGAGAAAATGCTTTGGTACAGTGACAGAGTCTTCAGAAACTAGTATAGTGGGGACTCCATCTGAATCTTCAGTGAAACATT ATGTTGATGCTGGATCCACCAAGACTCCAATGTTTCCTATGAAACGTAAGCTATCTGATGTGAAGGATATAGCAATGCTTTCATCGTCTGGAAAGCGACT GAATGTTGGGGATCAAGGACTTCGTTCTCCTATTTGTTCAAGTTCAATTCGTAAGAGCAGCCTGCAGACTGATGCTGTAGGGTTTTTTACACCAATTTCA AACCTAAGAAGTCAACAAAACCGTTGTACAGCTGACTCTGTGGATGATAATCAATACAGTATCTCAAATCCAGGTCAGATGATACCATCTTGCCAAGTAT TTAATGAGCTTCAGCTTAATAACCCAGAGCGTATAACACTAGATTCTTTAGTGGTTCAGTATCTGAAGCATCAGCATCGCCAATGCCCAGCTCCTATTAC CACCCTTCCTCCACTCTCTCTTCTACACCCTCATGTTTGTCCTGAACCAAAGCGAAGTCTTGATGCCCCTTCTAATGTGACAGCTCGGCTTGGTACACGC GAATATAAATCTTTGTATGGTGGAGTGCATGGGAATCGCAGGGATCGCCAATTTGTTTATAGCCGGTTTAGGCCGTGGCGCACTTGTCGGGATGATGCTG GTGACTTGTTTACTTGTATTACCTTTGTTGGGGACTCCTCTCATATTGCTGTTGGGAGTCACAACGGAGATCTCAAATTTTTTGACTCCAACAACAGCAA TGTGGTAGAGAGCTACACTGGTCACCAAAACCCTTTGACCCTTGTTCAGTCTTTTGTTTCTGGTGACAATCAGCTATTGCTTTCTTCAAGCTCCCAAGAT GTTAAGCTGTGGGATGCAACATCAATTTTAAATGGTCCTACCCATTCATTTGAAGGGTGTAAGGTTGCCAGGTTTAGCAATTCTGGAAATGTTTTTGCGT CCTTGCCATCAGAATCTGCCCGACGGGAAATCCTCTTGTATGATATCCAAACTTGTCTGTTGGAATCAAAGCTGACAGATCCACTTGAAGCTTCTACTGG GAGGAGTCATGTTTATTCTTTAATTCACTTTAGCCCTTCTGACTCAATGCTGCTTTGGAATGGTGTCTTATGGGACCGGCGGGTTTCTGGGCCTGTTCAT CGCTTCGAACAGTTGACAGACTATGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTCTGGGATTTGCGAAAGTTCAGAC TGCAACGTAGTGTACCTTCGTTAGATCAAACTTCAATAACATTCAATGCATGTGGTGATGTAATGTATGCAATCTTAAGGAGGAATCTTGAGGATGTTAT GTCAACAGTTCACAACACACGTCGAGGCAAGCATCCTCTTTATGCAGCTTTCCGTACATTGGATGCAATCAATTATTCTGACATTGCTACTATACCCGTG GATCGTTGTGTTCTTGATTTTGCTTCTGAGCCAACTGATTCATTTGTTGGGTTGGTTACTATGGATGATCAAGATGAGATGTATGCATCAGCCCGAATAT ATGAAATTGGTCGCCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCAGAGAGCGAAGAAGAAGATGAGGATGATGACGACGATGATGATATTGA TGTAGATCCTCTCTTAGGCCCTGGTTTCGGTGGAGACAGCGAGAGTGATGGTGATGACATGAGTAATGATGAAGATGACGATGATGATGAGGATATTATA AGTGACATCGACGGTGAAGATGCAGATTTCCTTTTGGATGATGTAGACTTCGACGGCGAAAACGAAATGTTCGAGATTGCTTCTGGTGATGAGGATGATG ATGATAGTCAAGGATATGAAACTTTAAGTAGTGATGAAGAGGATTATGTGAATAATCGTAATCGCTTTGGTTATTGACTGTTAAACGCAGGCTGTAATTA TGATTTCTTTCTTTATCATAATTCATTTTTGAGCTAAAGATATATTTGTTTGGGGCTCAAAATTTTGCTGTTACCCTTTTACATTATGCCCCATGCAATC TGACTATTATTATTGCTATGATTTTGATAGAATGTGAACCACCGCAATTGTATATGTTGTTTCAAAACCATAGTTTTTCTTCAATCTAAGTAGTAATGGG TGTCTTCACCTCACCGTTTCAGAATGTTGGAGTTGCACCTTGATATTACAACCTAGTACTCCTCTAATTGATTGACCTTAACATTTAAGCCATCTTGTGC ATAGATATTGAACCTATAGAGATGGTCTCCATGATCCTTGAATGGAAGGGTCAACTGAACCTATAGTCCTCTTAGCAGCACACCCTTTCAAAATGACATA AGTGGACCCTACAGTCCCTCCAACTACTAATCAACAACAATCGCTTTTCAATGATAACATCAGTCACTGCAAAATGATTAGTGGTTTGAGGATAAGGATG GCCCCAAGAGTTCAATGGAGTTTGATAGAAAAGGGATGAAGATGATGGAGGATGGTAAGGTTGGTGGTGGCATGATTCCTCAAGTAAATTGTTGAATTCA ATCACTTGCTGAAACTATGATTAGTGGGTACTATGGTCAATCAATGTTGAATTCAATCACTTGCAGTTTTTGTCATTTCTTAATGCAAATGTAGCAACAC GGGGAC
• Tissue: flowers
• Gene name: LI_gene_80402;
• Additional information: details;

Expression of Ll_transcript_52117

FPKM

• FPAB: 9.7
• FPNAB: 9.5
• LF1: 8
• LF2: 7.6
• LF3: 5.7
• LF4: 7.1
• UF1: 5.9
• UF2: 7.4
• UF3: 9
• UF4: 5.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_52117

• Blastp: DDB1- and CUL4-associated factor homolog 1 from Arabidopsis with 57% of identity
• Blastx: DDB1- and CUL4-associated factor homolog 1 from Arabidopsis with 56.36% of identity
• Eggnog: Vpr (HIV-1) binding protein(ENOG410XR8C)
• Kegg: Link to kegg annotations (AT4G31160)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019416933.1)
• Pfam: LisH (PF08513.10)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;