Ll_transcript_50487

• Id Trinity: FTRINITY_DN58840_c0_g1_i16
• Name Transcript: Ll_transcript_50487
• Sequence: CCCGTACATTATCTCACTCTTTGCACTTCCAAATTTCTCATCGATCCCCAACTAACGTCAAAATATATGATTCACCCCTAAGTTTACAATATTTATGAAT GACCCCAACAATTATTTTATTAACACCGTTCATTATTTATAACCACTACAATCTTACGCATTTCAAAGTACAAATTTGACCTTTCGTTTTCTGGATCTAG GGTTTCACTTCTGAGACCGTCGCTCCTCAATTTCATCATCATCAATCTCCTTAATCGCCATCATCAAACCCTAAATCACAACCAAAATTACTCTGAATCC AAGACCAAAACGAATCAATCGCTAAATTACTGTTTTGTGTTCTGACCGAATTGAGGGTTTGATTTGATTATCCATTCACACGCAATAAGTGTAGGGTTTT TGAATTGATTATTTTTTTCCATCTCCACCGTTACCATCAATTACTGATCTAAAATATTCTCAGAAAAAAATATGGCTTAATATTTTTTTCTTTTCATATT ATTATTATTATTATATTTTGACTTTTGTAACCCGTTGCTGATAAAATTGGGATTATGATGATGACGATGATGATGATGAATCTATAAAGCAAAGGAATTG AGAATTTTGATGAAAGCCCTAAATGAGACTTTGACTTGAGTTTGTGATTTGAAGGAACAAAAAAAGGGGGGAAATGTATAAATCAGTGGTGTACCAAGGT GAGATGGTGTTGGGTGAGGTAGAGATATACCCAGATGAGAAGAACAAGAAGAGCATGATGATGATGAATTTGAAGGAAATCAGAATAACAAACTTCTCAA AACAAAGTGAAAGGTGTCCACCACTTGCAGTGCTTCACACCATTACCTCATCATGTGGTGTTTGCTTCAAAATGGAGTCAAAGCTCACACAACAACAGGA CCTGCTATTTCACTTGCACTCCACATGTATCAGGGAGAATAAGACTGCAGTAGTGCCGCTGTACGGTGAAGAAATACATTTGGTTGCAATGTATTCTCGG ATTAATGATAGACCATGTTTCTGGGGATTTATTGTTGCACCAGGACTTTATGATTCATGCCTTGTGATGTTAAATCTTAGATGTTTGGGTATAGTGTTCG ATCTGGATGAAACTCTTATTGTTGCAAATACAATGCGCTCCTTTGAGGATAGAATTGAGGCTCTCCAGAGAAAAATAAACTCCGAGATAGATCCACAACG AATTTCTGGTATGCAAGCTGAGATCAGGCGTTACCTAGAAGACAAAAGTATATTGAAGCAATATGCTGAAAATGATCAAGTTGTTGATAATGGAAAAGTT ATAAAAGTTCAGTCGGAGGTCGTTCCAGCATTGTCTGGTAGCCATCAGCCAATAGTCCGACCACTGATACGGTTACAGGAAAAGAACATTATTTTGACAC GCATCAACCCACTGATTCGTGATACAAGTGTTCTTGTGAGGTTGAGACCTGCTTGGGAAGATCTTCGCAGCTACCTGACTGCGAGAGGCCGCAAGCGTTT TGAGGTTTTTGTTTGCACAATGGCCGAAAGGGACTATGCACTAGAAATGTGGAGACTTCTTGATCCAGATTTGAATCTGATAAGTTCTAAAGAACTATTA GATCGTATTGTATGTGTGAAGTCTGGTTTGAAGAAATCACTGTTCAATGTATTCCAAGATGGCTCATGCCATCCAAAGATGGCTTTGGTAATTGATGATC GCTTGAAAGTGTGGGATGAGAAAGACCAGCCAAGGGTGCATGTAGTCCCTGCATTTGCTCCATACTATGCTCCTCAAGCCGAAGCTAGCAATGCTATCCC TATCTTGTGTGTTGCAAGAAATGTCGCTTGCAATGTTAGGGGTGGCTTTTTCAAAGACTTCGATGATGGTCTTTTACAAAAGATTCCTCTGATTGCCTAT GAAGATGATATCAATGATATACCTTCTCCTCCTGATGTGAGCAATTATCTAGTTTCAGAGGATGATGCATCTGCTTCCAATGGAAATATAGATTCACTTC AATTTGATGGCATGGCAGATGCTGAAGTAGAAAGAAGGTTAAAGGAAGCATTATTAGCTGCTTCAACTATCCCTCCGATTACTGCTAATCTGGATCCCAG GCTAGCTTCTTCTCTTCAATACACGACGGCGTCTTCTTCTAGTACAGTTCCACCCCCAACAGTACAAGCACCTGTGATGCAAATTACCAATATACAGTTC CCTCAATCTGCTACTCTAGTTAAGCCAATGAACCAAGTTGCCCCAGAACAGAGCTTGCATAGTTCTCCTGCTAGAGAAGAGGGTGAAGTACCTGAATCAG AATTAGACCCAGACACAAGGCGCAGGCTTCTCATATTGCAGCATGGACAAGATATTAGGGAGAACACATCAAGTGAACCTCCATTTCCTGTCAGACTTCC CGTACAAGTTTCACCTCCACATATCCCATCACATGCGGGATGGTTTCCTGTAAAAGAGGAAAGGGGTCCACAGCAACTAAATCGGGTAGCACCGAAAGAA TTCCCTGTGGAGTCTGAACCGTTGCATATTGAGAAGAAGTGGCCTCGCCATCCATCCTTTTTCTCCAATGTTGACAATCCTATGTCATCTGATAGAATTC TCCATGAGAACCACCAAAGATTGCCAAAGGAGGTTTATCAAAGGGATGATCGCTCGAGATTAAACCATACACACTCTAGCTATCATTCTTTCGCCGGTGA TGACATTCCCTTGGGTAGCACTTCTTCCAGCAACTGGGATCTTGACTCTGAATCTGGACATCCTTTATTTTATGCAGATTCTCCAGCTGGCGTATTACGT GAAATTGCACTGAAGTGTGGAACTAGGGTGGAGTTCTTGTCATCTTTAGTTGCTAGCACGGAACTGCAATTCTCTATCGAGGCATGGTTTGCGGGAAAGA AAATTGGGGAAGGAATTGGTAGAACAAGAAAGGAAGCCCAATATAAGGCTGCCGAGGATTCTATTAAACAATTAGCTGATATATATATGTCCCATACAAA GGCTGATTCTGGTTCCACTTATGGTGATGCAACTGCGTTTCCTGGTGTGGAGGACAATGGTTTTATGAGTGGTGTTAATTCTCTTGGTAATCAGCTATTG CCTAAAGAAGAGTTGGACTCATTTTCAACTGCATCGGATCCATTAAGGGGGCTAGATCCTAGATTTGAAGTCAAGAGGTCAATGGGTTCAATTTCTGCCC TCAAAGAATTGTGCATGATGGAGGGTCTAGGTGTCAGTTTTCACTCTCCACCTGCTCCTGTGTCAACAAATTTTGTACAGAAAGATGAAGTACATGCACA GGTTTGTTGATATACTACTCCAAACAAATGGAGTTAAAATTATTAGTGTCTTTAAATTTCTGAAGGGTTTATGCTTCTCTCTCCCCTTCTATACTAGTTT CTCATTTATGATTTTTAATTTGTATTTATTGTAGGCACAGAGCTTACATTTTTCTTCTTTTCTATTTTCACTGCATATTTGGCCCATAGGGTGGCGGTTA GCGAGTTAAATGTTCCCTAGATGGAATTCCAGAACATTCTTAAGTTGCCTTCACTTTTATATATACGGCTTACAATTATTTTTGTTTTGAGAATTGGAGG TGAATAGTTACTGGTATACTGACATATAATTGAAATTCACTTTTACTTTCTCTAGTGTGATAGTTTGGCAAAAACATCATCCTGTAGTTGTGTAGGGCTT ATAAGAAGTGAAGGAAGCCTTCTTTCTTTTCTATAAATACATTTTTAGGCTTAAATATATTTTTTTGTCCCAGAAAAGTATACCGAATTTTGGTTTTATC CCATACAATTTAATTTTTTTGGGTTTTGGTTCTTATATCTTCCCAAAATTTTGATTTTATTCTCCAATGATGATGTGGCTAACACCAACATGTGACACAT GTCATACTATCTGATGGCGTGAACAATTGTGGTTTTGACATATCATTGGCAAGGACAAGAAACAAAATGTTCAACATTACCTATATTGTTGACAGTAAAA AATTATTTAAGCCTACATTTTAGGGTCTTGTTTTTCACCCACGTTAATGTGTTCCTTTTTTTAGTAAAAAGATCTAAAGTTCTCTAATGATTTAGGTCGA AATAGATGGTCATGTGTTTGGTAAAGGGATTGGGTTAACATGGAATGAGGCTAAAACGCAGGCTGCCGATAAAGCACTTGGAAGTCTAAGGACAATGCTT GGTGAAGGCACTCAGAAGCGGCAGGGTTCTCCTCTCAGGTCATGGCGAGGATTTTCGAATAAACGAATGAAGCAAGAATATCCCCGAACTCCGCAGCGGA TTCCTTCGTCTGCCAGATATCCCAGGAATGCTCCTCCAGTCCCTTGAAAGAGTAACAGCTTTTCATCTCACTTTATCAGCATGCCTTATGTTGGGAGAGT ATGCATTTGTTACAGAAGCAAGAATTTGGAGAATACTTGATGGATGAATGATGCTCGACCTCTCAGTCTTTTTTATTACCAAATCCAATGCCAAGCAGAA CCTCCACTTTTCTGCATCAACTTAACATCCTCACTCAAGTTGTTGAGATACCTGGACCAAGATTTTGTAACATAGTCATACCTTGGTCCTCTCAGGCAAT AATGCAGTGCTTTGAGGTTGGTTCAAAAGATGTTGTGCTGTCCACATGCTGTACTTGTATTTATGTGGCTTGTAATCTCTTTGTGCCAGTGTTACCCCAA GAGAGGTGCATTTGATTCATCATTAATTTTATTTGTCATCTGAAGTTATGATACACACCATTTAGTACAGGCCTTTTCACTGGTTTTTCACTAACCTTAC ACTAGTCATTTCATGATGCCACTCACAAATTATATAGCCCTACACAACCTTCTGGAGGCGCTGTTATGACCCCTAGTTTTAAGTATTATGCCCATTAGGT GAGAGTCTCATGCAATAGATCGTTTTGTTTTTAGTCTCATTAGGTGAGAGTTTCGTGCAATAGATCGTTTTGTTTCTAGTATTTTGGTGAGATTTTTACT TTTTCTTAGCAGACATCATTTTCATAGTTATATCATGTGTGCTTGTAAACTGAAATTTGACGCAAATAGCTAATAAACTTTGTTGTGCTAAATATACAAA ATTGGATGGTTGGAAATGACGAGTTCATAAGGAT
• Tissue: flowers
• Gene name: LI_gene_80538;
• Additional information: details;

Expression of Ll_transcript_50487

FPKM

• FPAB: 4.2
• FPNAB: 4.5
• LF1: 2.8
• LF2: 4.4
• LF3: 3.6
• LF4: 3.7
• UF1: 3.1
• UF2: 4.2
• UF3: 4
• UF4: 3.6

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_50487

• Blastp: RNA polymerase II C-terminal domain phosphatase-like 1 from Arabidopsis with 59.8% of identity
• Blastx: RNA polymerase II C-terminal domain phosphatase-like 1 from Arabidopsis with 59.58% of identity
• Eggnog: CTD (Carboxy-terminal domain, RNA polymerase II, polypeptide A)(COG5190)
• Kegg: Link to kegg annotations (AT4G21670)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425587.1)
• Pfam: NLI interacting factor-like phosphatase (PF03031.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;