| Id Trinity | FTRINITY_DN58840_c0_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_50489 |
| Sequence | CCTTAAATTAAGCATCAAAGACCCTTTTCCAAATTATATTTAATTTTTCTATTGAAGCCGTTACAGAGGAAAAATATATATTTAATAATCATTTTGATCT AGGGTTAAATATTTCATCACAATCAAACTTTTCTACTACTTGTATTATTTATTTATTAACATAAGCTAGGTTATGCATTTTGGAAGTACTTTTTTGTGAG CCATCGTTTTTAGGATCTAGGGTTTCTCTCTCTTACGTCTTGTTCTTCAATTTGAAAATTCATCTTCAACAATCTTCGCAGCTATCAACAAAAACCCTAA CTTTTCGCCACCCAAAGATAAAAGGAACCATTCACCGAATACCCCAATCAAAGAGAGATTCAAAATCACGCGTTCCTGCATTAGTTTGTTGTTACTGTTC TTGGAAATTTTTTATTCCCAATTTCCATCGCCATCACCACATTTCAATCACATGAAAAGTTAAAGAGAGAATGTATGAGTCAGTGGTGTATGAAGGGGAT GTGGTTTTGGGTGGTGTAGTGATACACCCATCAGAGAAGATAATTCATTTGAAGGAAATCAGAATAAGCCATTTTTCACAACCTAGTGAGAGGTGTTCAC CACTTGCAGTGCTTCACACCTTGGCCTCAACCAATGTTTGCTTCAAAGTGGAGTCAAAGACACCACAACAACAAGATGGGCTTTTTCATTTGCACTCCTT GTGTATCAGAGAGAATAAGACTGCTGTAGTGCCACTTGGTTTGGAAGAAATACATCTAGTTGCAATGCATCCACGGAATAATGATAGACCATGTTTCTGG GGAGTTGTCGTTGCCTCAGAACTTTACAATTCATGCCTTGTGATGTTAAACCTTAGATGTTTGGCTATAGTGTTTGATCTAGATGAAACACTTATAGTAG CAAACACAATGCGCTCGTTTGAGGATAAAATTGAGGCACTCCAGAGAAAAATAAACTCCGAGGTGGATCCACAGAGAATTGCTGGTATGCAGGCAGAGGT CAAACGCTACCTAGATGACAAGATTATATTGAAGCAATATGCTGAAAATGATCAGGTTGTTGATAATGGGAAAGTAATAAAAGTTCAACCTGAGATTGTT CCAGCATTATCTGATAGCCATCAGCCTATAGTTCGACCACTGATACGGTTACAGGAAAATAACATTATTCTGACACGCATCAATCCACAGATTCGTGATA CAAGTGTTCTTGTGAGGTTGAGACCTGCATGGGAAGATCTTCGGGGTTACCTGACCGCAAGAGGGCGCAAGCGTTTTGAGGTTTATGTTTGCACAATGGC TGAAAGGGACTATGCACTAGAAATGTGGAGACTTCTTGATCCGGATTCAAATTTGATAAACTCTAAAGAACTATTAGACCGCGTTGTGTGTGTTAAGTCT GGTTTGAAGAAATCATTGTTCAATGTCTTCCAAAATGCTTTATGCCATCCGAAGATGGCATTGGTAATTGATGATCGCTTGAAAGTGTGGGATGAGAAAG ATCAACCTCGGGTGCATGTTGTCCCTGCATTTGCTCCATACTATGCTCCCCAAGCTGAAGCAAGCAATGCTGTCCCTGTCTTGTGTGTTGCAAGAAATGT TGCTTGCAATGTTAGAGGCAGCTTCTTTAAGGAATTTGACGATGGTCTTTTACTAAAGATTCCTCAAATCGCCTATGAAGATGATATCAAAGATGTACTT TCTCCTCCTGATGTGAGCAATTATCTAGTTTCAGAGGATGATGCATCTGCTTCCAATGGAAATAGAGATCCAACTTTATTTGATGGCATGACAGATGCTG AGGTAGAAAGAAGATTAAAGGAGGCGAATATATCAGCTGCTTCAAGTATCCCTGTGGCAACTGCTAACCTAGATCCCAGCCTTACTACCTCTTTTCAATA CACAGCAGTGCCTTCTGTTTCTGGTTCAGTTCCACCCCCACCAGCACCATCATCTGTGTTGCAATTTCCCAGTGTACCATTCCTTCAACCTGCTAAGCCA ATGGGTCAAGTTGCCCCTTCAGGACCAACCTTGCATAGTTCTCCTGCTAGAGAAGAGGGTGAAGTACCGGAATCAGAATTAGACCCAGATACAAGGCGTA GGCTTCTCATATTGCAGCATGGGCAAGACATAAGGGATAACAAATCTAGTGAGCCTCCATTTCCCATTAGACAGCCTTTGCAAGCTTCAGCTCCTTGTGT GCCATCACGTGGGGCATGGTTCCCTGTTGAAGAGGAGAATGGTTCCCAGCAACTTAATCGGGATGTACCTAAAGGATTCCCTGTAGATTCTGAGCCACTG TGTATTGAGAAGCATCAGCCTCGTCATCCATCCTTTTTTTCCAAACTTGACACCTCTATTTCATCTGATAAAATTATCCATGAGAGCCACCAAAGACTGC CGAAGGAGGTAATGGCCATGTTTCAGTCTACCTGTAATGTTGATGGACTTTTGGCTTCTGTAGTGAATTAATTCTACTAAGATAATTTTTCACAGATGTA TCATAGAGATGATTGCTCAAGGTTAAGCCATAATAAACTCTCTACTTATCATTCATTCTCTGGTAAGCATGTTTAGGTACTATGCATGTTTAGTTGTTTC TCTGCTGCTTTTTCCCAAGTCTTCTCTTCTCATGTCCTGATTGATGGTGTTTGGCTGCCATTGTTTGGTTTTGAAATGTAATTCAGTTCGAGTACACTTT TGTTTTGGTTTCTATGTTTAATTAAGATGACTGATTTTTCTTTTTTATTTCCTTTTTGCTTTAGCATTTAGTAATTATTTAGCTTTGGACTATTGTTTTC TTCTTAAAATATACTTTTTGACTCTCACAATTATATCCTCCTCTATTTAATAAATATATCTTTCTAGATCATTCCCTTTGTCTTCCTTCACTAAACATAA GCATTAAAAAACTTTTTTTCTTGTTGTCTACCTTTTGTTTTTGTTTTCATTAACTGGTTCCCCCTTCTCCCAGTTCTATTTGTTTTTATGGTTGTTATGA AGGTGATGACATCCCCTTGAGTAGGTCATCTTCCAGCCACAGAGATCTTGACTCAGAGTCTGGTCATTGTCTATTGCATGCAGATAATACAGTTAGAATA GTACAGGAAATTGCACTGAAGTGTGGAACTAGGGTGGAGTTCTTGTCATCTTTAGTTGCTAGCACGGAACTGCAATTCTCTATCGAGGCATGGTTTGCGG GAAAGAAAATTGGGGAAGGAATTGGTAGAACAAGAAAGGAAGCCCAATATAAGGCTGCCGAGGATTCTATTAAACAATTAGCTGATATATATATGTCCCA TACAAAGGCTGATTCTGGTTCCACTTATGGTGATGCAACTGCGTTTCCTGGTGTGGAGGACAATGGTTTTATGAGTGGTGTTAATTCTCTTGGTAATCAG CTATTGCCTAAAGAAGAGTTGGACTCATTTTCAACTGCATCGGATCCATTAAGGGGGCTAGATCCTAGATTTGAAGTCAAGAGGTCAATGGGTTCAATTT CTGCCCTCAAAGAATTGGTAAGCTTTTTAATAAACAGAGCAGCCAGTTTTTTATCCATTTATTTGTGTTGGAGTTGGTTTTAACATGCTATAAAATCCTG CACCCAACTTCTTTAGTGCATGATGGAGGGTCTAGGTGTCAGTTTTCACTCTCCACCTGCTCCTGTGTCAACAAATTTTGTACAGAAAGATGAAGTACAT GCACAGGTTTGTTGATATACTACTCCAAACAAATGGAGTTAAAATTATTAGTGTCTTTAAATTTCTGAAGGGTTTATGCTTCTCTCTCCCCTTCTATACT AGTTTCTCATTTATGATTTTTAATTTGTATTTATTGTAGGCACAGAGCTTACATTTTTCTTCTTTTCTATTTTCACTGCATATTTGGCCCATAGGGTGGC GGTTAGCGAGTTAAATGTTCCCTAGATGGAATTCCAGAACATTCTTAAGTTGCCTTCACTTTTATATATACGGCTTACAATTATTTTTGTTTTGAGAATT GGAGGTGAATAGTTACTGGTATACTGACATATAATTGAAATTCACTTTTACTTTCTCTAGTGTGATAGTTTGGCAAAAACATCATCCTGTAGTTGTGTAG GGCTTATAAGAAGTGAAGGAAGCCTTCTTTCTTTTCTATAAATACATTTTTAGGCTTAAATATATTTTTTTGTCCCAGAAAAGTATACCGAATTTTGGTT TTATCCCATACAATTTAATTTTTTTGGGTTTTGGTTCTTATATCTTCCCAAAATTTTGATTTTATTCTCCAATGATGATGTGGCTAACACCAACATGTGA CACATGTCATACTATCTGATGGCGTGAACAATTGTGGTTTTGACATATCATTGGCAAGGACAAGAAACAAAATGTTCAACATTACCTATATTGTTGACAG TAAAAAATTATTTAAGCCTACATTTTAGGGTCTTGTTTTTCACCCACGTTAATGTGTTCCTTTTTTTAGTAAAAAGATCTAAAGTTCTCTAATGATTTAG GTCGAAATAGATGGTCATGTGTTTGGTAAAGGGATTGGGTTAACATGGAATGAGGCTAAAACGCAGGTATCTTATTTGCTTTAGTTATGAAAATTTCTTT AAGCATGCATGTCTTTTTGTATGAATTTGATTATTATTATCATTATCTTTTGGCTAAATATGGTTTTGGTCCATGCAAGTTTAGTCAGTTTTGATTTAGT CTTTATATTTTTTTATGGGGAGGGATCAAGTTACTCCAAGAGTAACTCTTTTGGACTTACTCCTCATCTTAGCGATCAATTTCTAGGAAATCCAAGGGTT TGAATTAATGAGTAG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_80538; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_50489
| Blastp | RNA polymerase II C-terminal domain phosphatase-like 1 from Arabidopsis with 63.35% of identity |
|---|---|
| Blastx | RNA polymerase II C-terminal domain phosphatase-like 1 from Arabidopsis with 63.35% of identity |
| Eggnog | CTD (Carboxy-terminal domain, RNA polymerase II, polypeptide A)(COG5190) |
| Kegg | Link to kegg annotations (AT4G21670) |
| CantataDB | Link to cantataDB annotations (CNT0000254) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019433418.1) |
| Pfam | NLI interacting factor-like phosphatase (PF03031.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |