Ll_transcript_51385

• Id Trinity: FTRINITY_DN58842_c2_g1_i4
• Name Transcript: Ll_transcript_51385
• Sequence: CCAAAAATCGTCGCAATTTAGACCGTTTTGCTTCTATAATAATCGAAGCTCATATCCTTTATATGAATATTCTTCTCAAACATTAATTTTCTTCTTCCAC CAAATCGTAGATCTACAATAGCACCCTTTAAGCTACGGTGAAGTTAGTGTATTTGGCAAGATGGGAGGTGGGTTTAGAGTGCTTCACTTAGTTAGGCCGT TTCTTTCGTTTCTTCCTGAAGTTCAAACTGCTGACAGGAAAGTGCCATTCAGAGAGAAGGTCATATATACCGTGATCTCTCTTTTCATTTTCCTTGTTTG TAGTCAGCTCCCTCTGTATGGAATACATTCAACAACAGGTGCTGATCCATTCTACTGGATGCGTGTTATTCTTGCTTCAAACCGTGGTACCGTCATGGAG CTTGGAATTACTCCTATTGTTACTTCTGGGCTGGTAATGCAACTTCTGGCTGGGTCTAAGATCATTGAAGTGGACAACAATGTCCGAGAGGATCGGGCCC TTTTAAATGGAGCACAGAAGCTACTCGGCATCTTGATAGCTGTTGGAGAGGCAGTTGCATATGTTCTTTCTGGGATGTATGGTAGTGTGGGCCAACTTGG AGTAGGAAATGCCATCCTCATCATCATCCAGCTCTGTTTTGCGGGTATAATTGTCATATGTTTAGATGAGCTTCTTCAGAAGGGATATGGTCTGGGGTCT GGAATTTCCCTATTTATAGCGACTAATATCTGTGAAACCATCATATGGAAGGCATTTAGCCCCACTACCATTAACAGTGGACGTGGAGCTGAATTTGAGG GTGCTGTTATTGCTCTGTTCCATTTGTTGATAACTAGAACAGACAAGGTCCGAGCTCTTCGTGAGGCATTTTACCGGCAAAATCTTCCTAATGTGACAAA CCTTCTGGCTACTGTCTTGATCTTCCTGATTGTTATATACTTCCAAGGTTTCCGTGTAGTCTTGCCTGTAAGGTCAAAGAATGCTCGTGGACAGCAGGGT TCATATCCGATCAAGCTGTTTTATACTTCCAACATGCCTATTATTCTTCAGTCTGCCCTTGTTTCGAATCTCTACTTCATCTCCCAGCTGCTCCACCGAA AGTACAGTGGAAACTTCCTAGTAAACTTGTTGGGAAAATGGAAGGATTCTGAATATGGAGGCGGTCATTCTATTCCTGTTGGTGGTATTGCATACTACAT CACTGCGCCATCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTGTTCTATCTTGTGTTTATGTTGTCAGCTTGTGCCTTGTTCTCTAAAACT TGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGAACAACAAATGGTAATGCCTGGACACCGTGAATCAAACTTGCAGAAGG AGCTGAACCGATATATTCCCACTGCTGCTGCATTTGGTGGCATCTGTATTGGTGCCCTGACAGTGTTGGCAGATTTCATGGGTGCAATTGGTTCAGGGAC AGGAATATTACTTGCAGTGACAATCATCTATCAGTACTTTGAGACATTTGAGAAGGAGAGAGCCAGCGAGCTCGGCTTCTTTGGTTTCTAAGCTCTGCTT ATCAAGTAATGTTGGTGATGCAGTTGTGCTCTCCCACACCCACAGTTTTGTTGTATTGACGGATGGTTGTAGGTCGTTTAACAACACTAAGGGAGGACAT ATGATAGCTTGTTATCACTTTTTCTCAACTAAGTGAGAAGTAGTATATCATTGTAAACTTTTTTTGTTTTCCTCTGAATATACTTGTTATCACTTGTTAA TTTAATTGATCAGTAGTTTTGGAAAATGCTTGCATTTGTAATTCATTTTCTATGCGCCTTGCAGTAGTTATTTTACATGATGATTTCTTTCGAAGAGTTT GTTATTTTGTGCAATGAGGAAACAATTAGAAGGTATAGGTTGAGGTAGCTGATAAAGGTAATAACCCCGGTATATGCCTTTTTTTATAGACTGGCTAACA TTGGTGTTTTTGTTATTTTGAGAAGTTAGTTGCACAATTGTACTCACATTCTTATGTCATTTTATATGATTGGTTAAAAAAATGTATTTAAATAAAAATT TAATAATTAAATATTTTTTGACATTTTTTGGGATGTAATATACTCTCCTCTCCAGACTAAAAACATTTCCACAACTCAGGCAAGTGAGGAGCAAGAAATG TCATCATCTCAGATGAATCCGAGGAAGGGGATTTTTCCACTCAAAGGCAGAGGAACAAAGGCTTGCCTTCTGAAGAGGTTGTCTTGTTATGTGCTGTTTA GAGAAGGTGAGTGAGACACATTATAGAGTGAACGTTTTCTGGCCCATTCGTGTGTGCCAAATCTTATACCACAATAAGGCTTGAGACTTACTAAAAAATA TAACACTACATCCTAATTCCTAACACCCTTTCCTTCCTTCTGTCGTTAGCCATCACTTTTTTTATGCATCTTTCTTCCCTGCTCTCTTTTCCACAATGCA GCCATGGTCCAGGAGCACCAACAAATCAAGCACACATAAGCAAGTTGCCACAAGATTTTAGAGTATATAGTTCATGGATCGTTTTATCTTTATTACTCTA ATTTTAGCATATTAAGATGCAATCTATGAATGCAAAGTCTTAAGGAAATCAAGGAAATCTTTATTGAAACAAAAAAACATAACAACAAACACACAAATGA TTCATCACAACCTTGAGTGAATTGAGAAAAAAAGGGAAAACGTCCGAATTTGAGAGGCCACAACAATAAAGTAGAAAACAACCAGCAAATACAACTTTAT TGTTTTCCCCATCAAGTTTGACATCAGAGACTTTGTCCTCGGAAGAGCAAAAGGGGAGTTAGTACCAAAGGAGTCATGTAAGGTCGCTTCTAAAACAAGA TCAGGAGCTTACATCCTAGAAGACTTGGACGACAAAGAGATTCCTACATACGAGCGATAATGTCCTTTGGTGTGGAACTACCCGGTGAAGGAACTCCAAT GCTCAAGTCAATATAAGTGTGTAAAAGTAGAATAAGGGTGGGTACTTATGGAAGACTTTCTCTATTTATAGAGAGGTGAAGTGGTTTGCACATAAAGATA AATGTTTTTATAATTATGAGCAACATGACTTTATCATTGATATGATTGATATTGCTATAGATTTAGTCTATCTATATAGTGTAGACAACATAATCCTGTA CTGCTCAAGCAGCACACCATGACCTTTGAAGTGATGAAGATGAATAAAATGTTAGGCCTAAGAAGTATAGAATAGGGTGTACGGAAAAATTGCAGCATTC AACTTGATGAGAGAAAATAAAACAACTTCAATTCATCTTTCATAACCTGCTGAAGGATCTAGCACAACTTAAATATAGCAAATAAAAGACTCGGTGTTAA ATGATTGGACTGTACATAGGTTAGATCTTACACTGTAGAAATAATCTAACACAATTCTCACATGGCACTGAATGATTGGACTCTACATAGTTATGATGCA TTTGCAGCAATCCTAAAGTAAACTTAGTTTCTGTGAGTTGGAAATAAGTACTCATTGTTCACATTTCTTTGTGTGTTTTTGGTTGCAGGGTTTTACAACC TCGTATTTG
• Tissue: flowers
• Gene name: LI_gene_80550;
• Additional information: details;

Expression of Ll_transcript_51385

FPKM

• FPAB: 4.2
• FPNAB: 2.1
• LF1: 0.3
• LF2: 0.3
• LF3: 0.7
• LF4: 0.6
• UF1: 0.3
• UF2: 0.4
• UF3: 1.2
• UF4: 0.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_51385

• Blastp: Protein transport protein Sec61 subunit alpha from Dictyostelium with 73.28% of identity
• Blastx: Protein transport protein Sec61 subunit alpha from Dictyostelium with 73.28% of identity
• Eggnog: The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (By similarity)(COG0201)
• Kegg: Link to kegg annotations (DDB_G0278885)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413450.1)
• Pfam: Plug domain of Sec61p (PF10559.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;