| Id Trinity | FTRINITY_DN58928_c1_g1_i15 |
|---|---|
| Name Transcript | Ll_transcript_36960 |
| Sequence | TCTGTCTCTATTTCCTTGTCCTTATCTCTGAAAGAACCTGGGACCCAAACACAAAATCCCGAATTTGCCCCTACCCAATTTGTCTTATAATATATATGGA AAAAATCCAACGTTACTGGCTTGAAAATATTATCATCATATATAAATAAATAAACGAAAAACATGTTGCTTAGTTTTTGAATTGCGAACTGTTACGGCGG CGATGGAGGTCACCGGCGGAAGGAACAGACGGTGGGAGGTGGCGGCGGTGGATCTCACAAAGGCGGCGCAGGAGAAAGGGAGTGATCCTCTGTTATGGGC GATTCAGATGTATTCGAATTTGAATTCGGCGGGAGAGTCGTTACCATCTATTGAACTCGCTGAGTTTTTGGTTTCTTACATTTGTTGGGATAATAATGTT CCTATTCTGTGGAAGTTTCTCGATAAAGCTCTCATGCTTCAAATTGTTCCACCTTTGCATATTCTTGCTCTTCTCTCTGTTAGGGTTCTTCCATGCAGGC ATGTCCAACCTGCAGCATATAGGCTATATTTGGAATTCATCAAAAGACATGCTTTTGGTCTTAAATCTCAGACAAACAGGCCAGATTATCCGAGGGTCAT GAAATCTATAGATGATGTTCTTCATCTTTCCCACATATTTGGCATGTCACAAAGTGAGCCTGGCATTCTGGTGGTTGAATTTATTTTTTCACTTGTCTGG CAACTGCTTGATGCATCGTTGGATGACGAAGGGCTGCTGGAACTTTCACTCGAGAAGAAGTCTAAGTGGGCAACACTATATCAAGAAATGGATCTGGACA TGCATGATAATTATAATGATAAGAAGTCTGGACATCATGAGAAATTGAGAAATGCAAATACCCTTATGGCTATCGAGATGATTGGGCAGTTTTTGCAGGA TAAAATATCTTCAAGGATTCTTTACTTGGCTCGCCGAAATTTGCCTGCACATTGGCTATGTTTTGTTCAGAGGTTGCAGCTGCTTGGAACAAATTCATTA ACATTGAAAAAGTCAAGAGATTTAAGTCCTGAGGCACTTCTGCAACTGACTTCAGATACTTCTGTGGTCTTGTCTCGAGAATGCAAAACAAGGTCACAAC AGAAGTTCCATACAGTTATGGATTTTGAATATCTTTCTTCTTCAGCATCACTCTGCCATGGTGCAACTCACTCTGCTCTTTGGATTCCTCTTGATCTCGT GCTGGAGGATGCCATGGATGGATATGAAGCTAGTGCAACAAGTGCTATTGAAATAATAAGTGGTTTGATAAAGACTCTCCAAGCCATAAACAGAGCCTCT TGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGGGAAAGAGATCCTATTGAGGGCCCAATGCCTCATCTTGATACTCGCT TATGCATGCTCTTGTGCATAATGCCTCTTGTTGTTGCTGATCTTATTGAGGAGGAGGAGGAAAGGACACCAATTGATGAAATAGAAACAGACAGTGGTCC TACAAATAACTGGAAAGAGAAGGTTCCAGGAAAGCGTCGCAGTAATTTAGTCACAAGTCTGCAGGTATTGGGCGATTATCAGAGCTTGCTCACTCCACCT CAATCTGTTGTGTCTGCTGCGAACCAGGCTGCTGCAAAAGCAACGCTCTTTGTTTCTGGCTTCTCAATAGGGAGTGCATATGTTGACTGCCTCAGCGTGA AAGAGATTCCAATTAACTGTTCTGGAAACATGCGCCATCTACTAGTTGAGGCTTGTATTGCTCGAAATCTACTCGACACATCAGCATATTTATGGCCAGG TTATATCAAGGGACATATCAATCAAATACCTCAGTGTATGCCAGCTCAAGTACCTGGTTGGTCATCATTTATGAATGGAGCACCACTTACTTCAGAGATG GTAAATGCTCTGGCTTCAAGTCCTGCTACATGCTTAGCAGAACTGGAGAAAATGTTTGAAATTGCAATTGGGGGATCAGAAGACGAGAAGATATCTGCTG CTGCTATTCTTTGCGGGGAATCCCTAATTAGAGGATGGAACATACAGGAGCACACTGCTCATTTCATTCTTAGGCTATTATCTCCACCGGTTCCTCTAGA GAACACTGAAGG BLAST |
| Tissue | flowers |
| Gene name | LI_gene_81282; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_36960
| Blastp | Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 56.89% of identity |
|---|---|
| Blastx | Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 56.89% of identity |
| Eggnog | Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER) |
| Kegg | Link to kegg annotations (AT3G23590) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419371.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |