| Id Trinity | FTRINITY_DN58928_c1_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_36948 |
| Sequence | ATTAAATAATGCTGTGTTGAGTTTGTGAACTCTGAACTGCTCCGGCGGCGATGGAGGTTTCCGGTGGAAGGAGGTGGGAGGCGGAGGTGGTGGAGTTAAC AAAGGTGGCGCAGGAGAAAGAGAGTGATCCTCTGGTATGGGCAATTCAGATGCATTCGAATTTGAACTCAGCGGGAGAGTGTTTACCCTCCGTTGAACTC GCGGAGTTATTGGTTTCTTACATTTGTTGGGACAATAATGTTCCTATTCTATGGAAGTTTCTCGATAAGGCTCTCATGCTTCAAATTGTTCCTCCCATGC TTCTTCTGGCTCTTCTTTCTCTCAGGGTTCTTCCATGTAGGCATGTCCAGCCTGCAGCATATAGGCTGTATTTGGAACTCCTCAAAAGACATGCTTTTGA ACTTAAATCTCAGACAAACAGACCAGATTATCCAAGGGTCATGAAATCTATAGATGACGTCCTTCATCTTTCCCACATATTTGGCATGTCACAAAGTGAG CCTGGCATTCTGGTGGTTGAATTTATTTTTTCAATTGTCTGGCAGTTACTTGATGCATCGTTGGATGATGAAGGGCTGTTGGAACTTACACTTGAAAAGA AGTCTATGTGGGAAACACTATATCAAGAAATGGAACTGGATAGGCATGATAATTATAATGATAAGAAGACCGAACATCATGAAAAATTGAGAAATGCAAA TGCTCTTGTGGCTATCGAGATGATTGGGCAGTTTTTGCAGGATAAAACATCTTCAAGAATTCTTTACTTGGCTCACCGAAATTTGCCTGCTCATTGGCTA AGCCTTGTTCAGCGGGTGCAGTTGCTCGGAGCAAATTCATTAACATTGAGAAATTCAAGAGTTTTAAGTCCTGAGGCACTTCTGCAACTGACTTCAGATA CTTCTATGGCTTTGTCTCGAGAATACAAAACAAGTTCACAACATAAGTTTCATACAGTTATGGATTTTGAATATCTTTCTTCTTCTGCATCACTCTGCCA TGGTGCAAGTCACTCTGCTCTTTGGATTCCTCTTGATCTCGTGCTGGAGAATGCCATGGATGGCTATGAAGTTAGTGCAACAAGTGCTATTGAAATAATT GGTGGTTTGATAAAGACTCTCCGAGCCATAAATGGGACCCCTTGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTATTCAGAGGGAAA GAGATCCTATCGAGGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGCATCATACCTCTTGTTGTTGCTGATCTTATTGAGGAGGAGGA GGAAAGGACACAAGTTGATGAAACAGAAACGGACAGTGATCCTACAAATAACTGGAAAGAGAAGATGGTTCCAGGAAAATGTCGCAATGATTTAGTCACG AGTCTGCAGGTATTGGGAGATTATCACAGCTTGCTCACTCCACCTCAATCTGTTGTGGCTGCTGCAAATCAGGCTGCTGCAAAAGCAATGCTCTTTGTTT CTGGCTTCACAATAGGGAATGCAAATTTTGACTGCCTCAGCATGACAGAGATTCCAATTGACTGTTGTAAGTCATATTGCTTTCAGTAATTCAGTGTCAA TCAGAAATTGCCTATGGTTCTTCAGCAGCTTGAGTAATTTATATCAACTTTAGCACTGCATACTGACGATGTTGTTTTCCATTTGAGATTCTCCATCTGG AAACATGCGTCATCTACTAGTTGAGGCTTGTATTGCTCGAAATCTACTCGACACATCTGCATATTTATGGCCAGGTTATGTCAAGGGACATATCAATCAA ATACCTCAGTGTATGCCAGTTCAACTACCAAGCTGGTTGTCGTTTATGGACGGAGCACCACTTGATTCAGCGATGGTAAATGCTCTGGCTTCAAGTCCTG CTACAAGGTATGTCAGATGCTCTTTTTTGTAAATTTACCAAAAGGTAAAACTACTGAATTTACGCTCCTGGATTTAATGGAAGCTTAGCAGAACTGGAGA AAATTTTTGAAATTGCAATCGGGGGATCAGAAGATCAGAAGATATCTGCTGCTGCCATTCTTTGTGGGGCATCACTAATTAGAGGATGGAACATACAGGA GTACACTGCTCATTTCATTCTTAGGTTATTATCTCCACCTGTTCCTCTAGAGAACACTGAAGGAAACAACCATTTGATTGATTATGCTCCAATACTTAAT GTAATCTTTGTTGGAATTGCATCCGTTGATTGTGTTCAAATATTTTCGCTCCATGGTTTGGTTCCGCAGCTTGCATGCTCATTGATGCCAATTTGTGAAG TTTTTGGGTCATGTGTGCCTAATATTTCATGGACACTGACATCAGGGGTGCAAATATCTGCCCATGCTGTGTTTTCAAATGCATTTATTCTTCTTTTAAA GCTATGGAAATTTAATCGGCCCCCTCTTGAACATGGAATTGGAGATGTACCTACTGTTGGTTCTCAGTTAACTCCTGAATACCTACTATTAGTTCGAAAC TCCCACTTAATGTCAGATGGTAACATCCACAAAGATCGAAACAGGAAGAGGCTATCTGAGATTGCAAGTTTATCATCACCAAATTCTGTATTTGTTGACT CCTTTCCAAAATTAAAAGTCTGGTACCGGCAGCATCAAGCATGTATAGCTTCAACACTGTCCGGTCTTGTTCATGGAACCCCTTTTCATCAAATTGTTGA TGGGCTTCTTAACATGATGTTTAGAAATATTAGTAGAGGGGACCAGGTTACTATTGTATCTGGAAGCAGTAGTTCTTCTGGACCTGAAAATGAAGATACT TTTATAGGGACAAAGTTGCCTGCATGGGATATTTTGGAAGCCATTCC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_81282; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_36948
| Blastp | Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 53.98% of identity |
|---|---|
| Blastx | Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 53.59% of identity |
| Eggnog | Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER) |
| Kegg | Link to kegg annotations (AT3G23590) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019425895.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |