Ll_transcript_36949

• Id Trinity: FTRINITY_DN58928_c1_g1_i6
• Name Transcript: Ll_transcript_36949
• Sequence: ATTAAATAATGCTGTGTTGAGTTTGTGAACTCTGAACTGCTCCGGCGGCGATGGAGGTTTCCGGTGGAAGGAGGTGGGAGGCGGAGGTGGTGGAGTTAAC AAAGGTGGCGCAGGAGAAAGAGAGTGATCCTCTGGTATGGGCAATTCAGATGCATTCGAATTTGAACTCAGCGGGAGAGTGTTTACCCTCCGTTGAACTC GCGGAGTTATTGGTTTCTTACATTTGTTGGGACAATAATGTTCCTATTCTATGGAAGTTTCTCGATAAGGCTCTCATGCTTCAAATTGTTCCTCCCATGC TTCTTCTGGCTCTTCTTTCTCTCAGGGTTCTTCCATGTAGGCATGTCCAGCCTGCAGCATATAGGCTGTATTTGGAACTCCTCAAAAGACATGCTTTTGA ACTTAAATCTCAGACAAACAGACCAGATTATCCAAGGGTCATGAAATCTATAGATGACGTCCTTCATCTTTCCCACATATTTGGCATGTCACAAAGTGAG CCTGGCATTCTGGTGGTTGAATTTATTTTTTCAATTGTCTGGCAGTTACTTGATGCATCGTTGGATGATGAAGGGCTGTTGGAACTTACACTTGAAAAGA AGTCTATGTGGGAAACACTATATCAAGAAATGGAACTGGATAGGCATGATAATTATAATGATAAGAAGACCGAACATCATGAAAAATTGAGAAATGCAAA TGCTCTTGTGGCTATCGAGATGATTGGGCAGTTTTTGCAGGATAAAACATCTTCAAGAATTCTTTACTTGGCTCACCGAAATTTGCCTGCTCATTGGCTA AGCCTTGTTCAGCGGGTGCAGTTGCTCGGAGCAAATTCATTAACATTGAGAAATTCAAGAGTTTTAAGTCCTGAGGCACTTCTGCAACTGACTTCAGATA CTTCTATGGCTTTGTCTCGAGAATACAAAACAAGTTCACAACATAAGTTTCATACAGTTATGGATTTTGAATATCTTTCTTCTTCTGCATCACTCTGCCA TGGTGCAAGTCACTCTGCTCTTTGGATTCCTCTTGATCTCGTGCTGGAGAATGCCATGGATGGCTATGAAGTTAGTGCAACAAGTGCTATTGAAATAATT GGTGGTTTGATAAAGACTCTCCGAGCCATAAATGGGACCCCTTGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTATTCAGAGGGAAA GAGATCCTATCGAGGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGCATCATACCTCTTGTTGTTGCTGATCTTATTGAGGAGGAGGA GGAAAGGACACAAGTTGATGAAACAGAAACGGACAGTGATCCTACAAATAACTGGAAAGAGAAGATGGTTCCAGGAAAATGTCGCAATGATTTAGTCACG AGTCTGCAGGTATTGGGAGATTATCACAGCTTGCTCACTCCACCTCAATCTGTTGTGGCTGCTGCAAATCAGGCTGCTGCAAAAGCAATGCTCTTTGTTT CTGGCTTCACAATAGGGAATGCAAATTTTGACTGCCTCAGCATGACAGAGATTCCAATTGACTGTTGTAAGTCATATTGCTTTCAGTAATTCAGTGTCAA TCAGAAATTGCCTATGGTTCTTCAGCAGCTTGAGTAATTTATATCAACTTTAGCACTGCATACTGACGATGTTGTTTTCCATTTGAGATTCTCCATGTGA GTTTTCTTCCTGATTTAAAAAAACACATGCCTCATATTTCAGACGTTTAGATGAATAAATAAAACAAAAATCTGTGTGATAATGTATCTGATTGCTGTGA AGACAATCTTTATCGTCTGATTTAAGTAAATTTGAACTTTGGAAAAGCAAATGGATTACACAATTTGAATCTATGATAGCTATGCTGTAGTCAAGACACA AGGATCCATAACAGTTACTCGTGTTCCCACATTATTCTTTGGATTGATTATGTGACTGTACAGAAGTGGAAATGATCTTATTTTGCTAAATATTTGTGCT AAACAAAATCATTGCATGGTTGAATAAAGAAAAATCATTTCCCTTGTCATAAACTATCTCTCCCAAAATCTTAAGTTGTTGATAAAGGCGTACGAGTGAT TTGTATTACATCTCTTAACACATTCCCTTTACCCCAAAAGCTTGTGCTTAAATTCAATTTATTATTGTTAAATAGGGCAGCAAGGACCAACCACTTGTCC CATTCCTGTATTTGTTAAATTTCTAGTTTAGCATTTCAATTTTCCCAAAGTTAGCGATTCTGCATTTTATATTTGGCAGTTTATTTCGTAAGGAATTTGT ACTCTTGATGCTATACAGAGTCAATCCTATGCCTAGATAAAAGGTGGAGATTATGTTAGGCAGTCAACAACTAACATAAAACTTTGTCGACTCTCTATGA ATCATTCAGGAGTTATATATCTGAGAAAAAATGAAGGAAAACAATCTTGGGAAAAATAATTTTATTTAGTAATAACTAACAACCCAACAGAATAACAATA TCTTAAGAACAGTGGTGCAAACAGTTATTGACCTAATCGACCAGTTGACTGGTTAATGTTCCCAAATTGTAATAATTTTACAAATAATTGTTTCTTTGTA ATTTCCCTTAATTTTGTAAAACTATTTCTTCTTTTCAGCTGGAAACATGCGTCATCTACTAGTTGAGGCTTGTATTGCTCGAAATCTACTCGACACATCT GCATATTTATGGCCAGGTTATGTCAAGGGACATATCAATCAAATACCTCAGTGTATGCCAGTTCAACTACCAAGCTGGTTGTCGTTTATGGACGGAGCAC CACTTGATTCAGCGATGGTAAATGCTCTGGCTTCAAGTCCTGCTACAAGGTATGTCAGATGCTCTTTTTTGTAAATTTACCAAAAGGTAAAACTACTGAA TTTACGCTCCTGGATTTAATGGAAGCTTAGCAGAACTGGAGAAAATTTTTGAAATTGCAATCGGGGGATCAGAAGATCAGAAGATATCTGCTGCTGCCAT TCTTTGTGGGGCATCACTAATTAGAGGATGGAACATACAGGAGTACACTGCTCATTTCATTCTTAGGTTATTATCTCCACCTGTTCCTCTAGAGAACACT GAAGGAAACAACCATTTGATTGATTATGCTCCAATACTTAATGTAATCTTTGTTGGAATTGCATCCGTTGATTGTGTTCAAATATTTTCGCTCCATGGTT TGGTTCCGCAGCTTGCATGCTCATTGATGCCAATTTGTGAAGTTTTTGGGTCATGTGTGCCTAATATTTCATGGACACTGACATCAGGGGTGCAAATATC TGCCCATGCTGTGTTTTCAAATGCATTTATTCTTCTTTTAAAGCTATGGAAATTTAATCGGCCCCCTCTTGAACATGGAATTGGAGATGTACCTACTGTT GGTTCTCAGTTAACTCCTGAATACCTACTATTAGTTCGAAACTCCCACTTAATGTCAGATGGTAACATCCACAAAGATCGAAACAGGAAGAGGCTATCTG AGATTGCAAGTTTATCATCACCAAATTCTGTATTTGTTGACTCCTTTCCAAAATTAAAAGTCTGGTACCGGCAGCATCAAGCATGTATAGCTTCAACACT GTCCGGTCTTGTTCATGGAACCCCTTTTCATCAAATTGTTGATGGGCTTCTTAACATGATGTTTAGAAATATTAGTAGAGGGGACCAGGTTACTATTGTA TCTGGAAGCAGTAGTTCTTCTGGACCTGAAAATGAAGATACTTTTATAGGGACAAAGTTGCCTGCATGGGATATTTTGGAAGCCATTCCCTTTGTTGTTG ATGCTGCTGTCACAGCCTGTGCTCATGGAAGACTGTCTCCTCGTGAGTTGGCAACAGGGCTGAAAGAATTAGCTGATTTTCTTCCTGCATCATTGGCAAC TATAATAAGTTACTTCTCTGCTGAAGTAACTCGAGGTGTTTGGAAACCTGTATTTATGAATGGAACGGATTGGCCAAGCCCTGCTGCAAATCTATTGAAC GTTGAGGAACAGATCAAGAAGATTTTGGCTGCGACTGGTGTTGATGTGCCTAGCCTTGCTCCAGGAGGCAGCTCACCTGCCACACTTCCATTGCCATTGG CTGCTTTCACAAGTCTCACCATAACCTACAAAGTTGACAGAGCATCTGAGCGTTTTCTGAATTTGGCTGGCCAAACACTGGAGTCCCTTGCTGCAGGTTG TCCATGGCCTAGCATGCCAATTGTGGCTTCCTTGTGGACCCAAAAGGCAAAACGTTGGAGTGACTTCCTTATCTTCTCAGCTTCTAGAACAGTCTTCCTC CATAATAGGGATGCAGTTGTTCAACTTCTTAAAAGCTGTTTCACAGCTACCCTTGGCATGAATAGCTCTCCTATCTCAAGCAATGGTGGTGTTGGAGCCC TCCTTGGCCATGGATTTAAGTCCCATTTTTGTGGAGGGATGTGCCCTGTTGCTCCAGGAATTCTCTACTTACGTGTTTATCGGTCAATCAGAGATGTTGT TTTCTTGACAGAAGAAATTGTTTCCATCTTGATGCAATCTGTGCGAGAAATTGTATGTAGTGGTCCGTCAAGGGAGCAATTACAGAAGTCGAAAGCAACC AAAGATGGCATAAAATACGGACAGGTTTCACTTGCCGCAGCAATGACTCAGGTGAAACTTGCAGCTGCTCTTGGGGCTTCTTTAGTATGGCTATCTGGAG GGTTGGTGCTGGTTCAATTATTAATAAAAGAGACTTTGCCCTCATGGTTTATATCTGTTCACAGATCAGGCCAGGAAGAAAAGTCAGACGGAATGGTTGC AATGCTTGCTGGATATGCACTTGCTTACTTTGCAGTGCTTAGTGGGGCTTTTGCTTGGGGAGTTGACTCATCATCATCGGCTTCAAAACGACGTCGAAAA GTCTTAGGTGTCCACATGGAGTTTCTGGCAAGTGCACTCGATGGAAAAATATCACTTGGCTGTGATTCAGCTACTTGGCGAGCCTATGTGTCAGGGTTTG TGAGCCTGATGGTTAGTTGCACGCCAAACTGGGTGCTAGAAGTAGATGTCGATGTGTTGAAGAGACTGAGCAATGGCTTGAGGCACTTGAATGAAGAGAA GCTTGCACTTGCTTTGTTGGGTAATGGTGGGGTTGGTACTATGGGTGCTGCAGCTGAACTCATAATTGAAAGTGGAAGGTAAGCTTATTCTCCAGCACCT GTGCCTTTTAGTATGCTTATGTACAGTAGTTTCATGTTTAAAAACTTGTGCAGTGCTAAATCTCCTCTTTTGTTTCAAAAGCATCACTTATGAGAATGGA AAATTTTGTATCTGAACTATGCTCAATCTAAGGTAACTTTCTTTCATGTTTGAAGTGATGAAACATTGCATAGGTAAAGATATGTTAAGTTTTTTATTCA TTATTCTGGGGGGAAATAAAACTACCAACTATTTATGAATCTATTAGTATTTTATTATTATATCACTCCATTGCTAAGGTATATAAGTGATTTGAAATAC TGTGTATAAAGTATAATCAATGAACATAGTATTAGACTTGGGTACTATTGTGTCTGAAATGTGAATGGTATTAATATATTTCTCCAATTGTTTCTAG
• Tissue: flowers
• Gene name: LI_gene_81282;
• Additional information: details;

Expression of Ll_transcript_36949

FPKM

• FPAB: 0.2
• FPNAB: 0.7
• LF1: 0.6
• LF2: 3.4
• LF3: 0.1
• LF4: 0.1
• UF1: 0.7
• UF2: 0.4
• UF3: 1
• UF4: 0.3

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_36949

• Blastp: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 69.89% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 69.15% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER)
• Kegg: Link to kegg annotations (AT3G23590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425896.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;