Ll_transcript_39642

• Id Trinity: FTRINITY_DN58955_c0_g1_i19
• Name Transcript: Ll_transcript_39642
• Sequence: AAGAAGAGGCAAAAGGGCCTCAAACCAGGAATGCTGCACGTAGAAAAGCAGCTCTTGACAAAGAGGCGCAAATGAAGCCTGTAAATGGCGACTCTACTTC TGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGCATTGATGATTGATGATGATGATGATGATGATATTTCTGATGATGAAGACGATGAC CATGAAGATGACCTGGGGGGTGTTTCTCTCCCTGTTTGCCTGCCTGACAAAGTACATGATGTGAAATTGGGTGAGTCTGCTGAGAGCACTGTTGCTCCTG CGACATGTGATGGGCAGACTAATGCAGCCTCAGGCTCCAGTAGCAAAGTTGGTACAGCCAGGGGATCAGGCAATGCTGAGTTTAGGAGTGGCTATTCTTC TACCTCAAGGGGTGCATTGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGGTCTGTTAATAGCAGAGGTATCCGGGGTGGCAGAGATAGGCATGGACGT CCATTGTTTGGTGGTTCTAATGATCCTCCTAAGTTGATCTTCACTGCTGGCGGGAAGCAGCTTAATAAGCATTTGACTATATATCAGGCAATTCAGAGAC AGCTTGTGGTAGATGAAGATGATGAAGAGAGGTTTGCTAGCAGTGACTTTGTATCTAGTGATGGAAGCAGGTTGTGGGGAGATATTTATACTATAACTTA TCAGAGGTCTGAGAATCAGACCAACAGAGCTTCTGCTGGAGGTTCAAGTTTAAATGTTTCAAAATCTGCAAAACCTGCGCCTGCATCAATTTCTGATTCT GAAGCCAAGCTGCATCAAACTTCTGTTCTTGATAGTATCTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAATCTAATCCTACATACAACATATTGGCAC TGTTGCGTGTACTGGAGGGTTTGAACCAGCTAGCACCTCGTTTAAGGGCCCAGGTGCTTACTGATAGCTTTGCTGTTGGAAATACTTTGGATTTAGATGA GCTAGGTGTCACCGGTGGTGCTCGGGTTCCTCCTGAGGAATTCATCAGCAGCAAGCTCACTCCAAAATTAGCTAGGCAAATGCAAGATGCCCTAGCATTA TGCAGTGGGAGTCTCCCCTCGTGGTGTTACCAGCTAACTAAAGCTTGCCCTTTTTTGTTTCCTTTTGAGACCCGGCGACAGTACTTCTATTCTACTGCCT TCGGATTGTCTCGTGCTCTACATCGACTGCAGCAGCAACAAAGTGCAGATGGCCATGGATCAACAAATGAAAGAGAGGTGAGGGTTGGGAGATTGCAGCG CCAGAAAGTCCGCGTTTCTCGAAATCGTATTTTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTT GGTGAAGTTGGCACTGGCCTTGGTCCTACCCTTGAGTTTTATACACTTTTAAGTCACGACTTGCAAAAGGTTGGACTGCAAATATGGAGATCAGATTCTT CTGAGAACTTTCAAATGGAAATTGAAGGAAATGAAGAGAAAAGTAAAAGCATTGAAAGCTCTTTTGCTGGAGATGCAGAACTTGTTCAGTCTCGTTTTGG ATTGTTTCCTCGGCCTTGGCCTGAAAATTCCGATGCAACTGCGGGTAGCCAGTTTTATAAAGTAATTGAACATTTCCGGTTGATAGGCCGTGTAGTTGCT AAAGCTCTTCAAGATGGACGCTTACTGGATTTGCCATTGTCGGTGTCATTTTATAAGCTCGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTGTTA TTGATGCTGGGCTTGGTAAAACTTTGCAAGAGTTGAACGC
• Tissue: flowers
• Gene name: LI_gene_81515;
• Additional information: details;

Expression of Ll_transcript_39642

FPKM

• FPAB: 5.8
• FPNAB: 5.8
• LF1: 7.1
• LF2: 7.9
• LF3: 7.4
• LF4: 4.8
• UF1: 2.8
• UF2: 10.4
• UF3: 8.6
• UF4: 2.6

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_39642

• Blastp: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 67.65% of identity
• Blastx: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 66.78% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (AT4G38600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454237.1)
• Pfam: HECT-domain (ubiquitin-transferase) (PF00632.24)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;