| Id Trinity | FTRINITY_DN58955_c0_g1_i20 |
|---|---|
| Name Transcript | Ll_transcript_39643 |
| Sequence | GAAGACTGTAAATATTGACTCTACTTCTGAGGTATGCTTCGAAGTCATAGCCATGAGCCTGTAATTCTACCGGACCTTTTCTTCAGTTAGTTTATAACTC TTAACTATTTATTCTTTGTTGGGTAGTTTTTACCCTGTACTCTTCCCCTTTGTTCTTTTCCTTCTTCATCTGGTCATTAATTTTTATGATTTTGTTTTGA CTCAAGAAGTAAAGTATAAAGGAAAGATTTGTTATAGTGCCATTTTAATAAGCTTAAAGTTGCTCTTTTGCATTGTGCACAGCAGGCTTGAAAAGGCATC TGAAATTTCTCTGCTGATATCTGTAGCTTTGGACACTCTAGGTTTTCTTGTTGTTAGATTGTGAAATGACTTATCTCTGCCATATAGTTTATAAATTTGA ACTATTTAGTCTTCGTTGCATAGTTCTTTTACTCTTCCTTTTTTCCTTTCTTCATCTGGCCATTAATTTTGATGGTTTTGTTTGGACTTAGAAAGTAAAA TGTAAAGGAAAAATTCATAATAGGGACATTTTAATAAACCTGAAGGTGCAGTATTGTGTTGTGCATTGCAGGCTTGGAAAGATGGCTGAAATTTCTTTGC TGATATCTGTGGCTTTGTACACTCTTGATTTTGTTGTTGTTAGTTGCTGAAATGACTTATTCTGCCGTTTAGTTTTTTAGCTTGCTGATGATGATAATTA CTTCATTAAATTCTAATCACCACTTACCCGCTAAAACACTTAGTTCAAGTGCTCTTCTGATATTTTGTTGAGCAGTTATTTTTTCTTTCTGCCACTCATT TATCTATGTTGTTTTGAAGTAACATACTGGTATCTGACATATTTAGGTTGCAGTAAAAATGGATATTTTAAATATGTGGACCCCCTTTCCTCTCACACAA AATGCGTACTTTTAAGATTAATTGCAACTTTGTGTAGGACTAAAAATAATTTACTTTATGCAATGTACTTTTTGTTATTTTTTTAACATTGAACTTGGTC ACATTATGAGATTTGAAGCTTGATACTCTTGTTAAGGAATATTTCAGATTCATTTTTGGCTGAGGTTACATTTTTCAGATTGAGGTATTATGACAGTTAT TACATGGTAAATGTTGTTTCATTACACTTTTGTTGAAAGTTGGTTGGGTATTCACTGGTACGGTATGCATGATGCAGTGAATATGACCTAAACTTAGGTA CCAAGTACGTTTTGTCTTTGCTCTGAATTATTATTTTTTACTTGGTTGATGTTTCCTGAGACATTGTAACAGTTTCTGTGGCTACTTTCTGTTAAATGTT TTCTATCTAGTGACATTTCCATTTTTTGTGTGCCAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGAATTGATGATTGATGAGGAATTGA TGATTGATGATGATGATGATGATATATCTGATGATGAAGATGATGATCATGAAGATATGTTGAGGGATGTTTCTCTCCCCGTTTGCTTGCCTGACAAAGT CCATGATGTTAAATTGAGTGACTCTGCTGAGTGCACTGTTGCTCCTGCAACAAATGATGGCCAGACTAATGCAGCCTCAGGTTCTACTAGCAAAGTTAGT ACAGCCAGGGGGTCAGACACTGGTGAGTTTAGGAGAGGCTATTCTTTTAGCTCAAGGGGTGCATTGTCATTTGCTGCTGCTATGGCTGGACTTGGATCTG TTAATAGCAGAGGTATCAGGGGTGGCAGGGATAGGCATGGGCGTTCATTGTTTGGTGCTTCTAATGATCCCCCAAAGTTGATCTTCATTGCTGGCGGGAA GCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAGAGACAGCTTGTTGTAGATGAAGATGATGAGGAGAGGTTTGCTGGCAGTTCCTTTGTATCT AGTGATGGAACTAGGTTGTGGGGAGATACTTACACACTAACATATCAGAGGGCCGAGAACCACATGGACAGGGCTTCTACTGGAGGTTCAAGCTTAAATG TTTCAAAATCTGGAAAATCTGTGTCTGCATCAAATTCTAGCGCTGAAGCCAAGCTGCATCAATCTTCTGTTCTTGATAGCATCTTGCAGGGAGAATTGCC CTGTGAGCTGGAGAAGTCTAACCCTACATACAACATATTGGCACTACTGCGTGTGCTCGAGTCTTTGAACCAGTTAGCACCCCGTTTAAGGGTCCAAGTG GTTACTGATAACTTTGCTATGGGAAAATCTTCGGATTTAGATGAGCTAGGTGTCACCAGTGGTGATATGGTTCCACCAGAGGAATTCATCAGCAGCAAAC TTACTCCAAAACTAGCTAGGCAAATGCAAGATGCCCTAGCATTATGCTGTGGGAGCCTTCCCCCATGGTGTTACCAATTAACTAAAGCATGCCCTTTTTT GTTCCCTTTTGAGACCCGGCGACAGTACTTCTATTCTACTGCCTTCGGATTGTCTCGTGCTCTACATCGACTGCAGCAGCAACAAAGTGCAGATGGCCAT GGATCAACAAATGAAAGAGAGGTGAGGGTTGGGAGATTGCAGCGCCAGAAAGTCCGCGTTTCTCGAAATCGTATTTTGGATTCTGCTGCTAAAGTGATGG AGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTTGGTCCTACCCTTGAGTTTTATACACTTTTAAGTCA CGACTTGCAAAAGGTTGGACTGCAAATATGGAGATCAGATTCTTCTGAGAACTTTCAAATGGAAATTGAAGGAAATGAAGAGAAAAGTAAAAGCATTGAA AGCTCTTTTGCTGGAGATGCAGAACTTGTTCAGTCTCGTTTTGGATTGTTTCCTCGGCCTTGGCCTGAAAATTCCGATGCAACTGCGGGTAGCCAGTTTT ATAAAGTAATTGAACATTTCCGGTTGATAGGCCGTGTAGTTGCTAAAGCTCTTCAAGATGGACGCTTACTGGATTTGCCATTGTCGGTGTCATTTTATAA GCTCGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTGTTATTGATGCTGGGCTTGGTAAAACTTTGCAAGAGTTGAACGCCCTTGTTTGCCGGAAA AATTATTTAGAATCTGGTGGTAGCTATACTGATAAAATTGCTAATTTACATTTTCGAGGAGCCCCAATTGAAGATCTGTGCTTGGATTTCACACTTCCTG GTTATCCAGAATACGTTTTGAAACCAGGAGATGAAATTGTTACCATTAATAATTTGGAGGAGTACATATCCATGGTGGTTGATGCAACTGTCAAGACTGG AATCATGCGTCAAATAGAAGCATTTAGAGCAGGATTCAATCAGGTTTTTGACATTTCAAGTCTACAAATTTTTACTCCCCAAGAACTGGACTATTTGCTT TGTGGTCGTAGAGAGTTGTGGAAGGCTGAGACACTAGCTGATCATTTAAAGTTTGATCATGGGTACACTGCCAAGAGCCCTGCTATAATTAATTTACTTG AAATAATGGGAGAGTTCACACC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_81515; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_39643
| Blastp | E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 68.95% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 67.01% of identity |
| Eggnog | ubiquitin protein ligase(COG5021) |
| Kegg | Link to kegg annotations (AT4G38600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413064.1) |
| Pfam | HECT-domain (ubiquitin-transferase) (PF00632.24) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |