Ll_transcript_38537

• Id Trinity: FTRINITY_DN58960_c1_g1_i6
• Name Transcript: Ll_transcript_38537
• Sequence: AAGCAAGACGTGTAGGCGGATCGACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCG AAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCAT AGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCACGAACAGGATCTATATAGACACATAGACCCATGGATCCATACATCTCGATCGGA AAAGAATCAATAGAAAAAGAATCGGAATTGATCGATATATCTCTCGAAACAAACGAAAAGGAAACGAAAGACGAAACATAAATCATGGATCGACTAAGCC CTCTCGGGGACTTGCTTAAGAATAAGAAAGAGGAATCTTATGTAAATACCATGGAATAAGGTTTGGTCCTATTCATGGGGATTTTGTAAATATTCCACTC GAGAAAGATAAAATTCGAAACAATTGGGATTTTTTTGGAGATTGGATGCAGTTACTAATTCATGATCTGACATGTACAGAATGAAAACTTCATTCTCGAT TCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGA TGATCGATTTAACCTCTGATCAAAAAGATATATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCCCTATTGTTCCGATGGAG AGAAGAGCCTATGATTAGCTTTTCAGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCT CTATCCGTAGAGTATATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTGGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGCGCTA ACGATTTAATAACTATCTTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCTATCTACTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTAC TATGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTTATGGTTTTTCTTGGCTATATGGTTCATCCGGGGGAGAGATCGAGCTTCAAGAA ATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCGGGAATTTCAATTGCGCTTATATTCATCACTATAGGAATTGGGTTCAAGCTTTCCCCAG CCCCTTCTCATTAATAGACTCCTGACGTATACGAAGGACTGCGGTTCGTTCGATAAATTCCTACCTCTCTATCTAGTTCTTTTCACCTTTTAATATGTAC AAATGTGGTATGGTAAGTTGACATACATCTAATATCTCACAATGCATGTCACTCATATGAGATAGTGGATATACTTGAAAGGTGTTTGGTTCACTTAAAA AAAGTTCTTCCTTGGAAATGGTGGTTTTGGAAAGTTGGATTCCCATGTAAATATGGCTTTCAGGACATATTCTTGCCAAAAAGTGGGAATTGTGCATCAC TTGGACTAACAGAAATGTTTGAACAAACCTGATATGATGGCAATGTTTTTTATTTGAAACTTGAGTTAAATGCTTGCTAAGGTGCCATTGTAATAATACC TACCATCAAAAGTGTAAACCAAATTGCAGTTTCATGTACCCATTTATGAGGATATTCATTCTCTTTGTTAACTTTCATGTGCCTATTTGTGTATGTCCAT ATCAGCTGTTTGAAAACTTGCTTCAACTGTCTGAACCACAAAAGTGAGGTCCAAAATGCAGATACGTGGAGAGATGCCAACATTGCAAAATTGGTGAACT CACCGTAAATGCCACCCCATATGAGATTACCTTCTTTGTTCATGTTTGGTATAAATTGTTATTTCTTTATAGACTAAGAGTCACATAGCCAGTTTCATGA TAATACCAAAACTAATGTATCATGGTTTAGAGGAAACCATAATATGTGAGATTATAAGAGAAAAACCAACTCAACCTGGTGAAGAGGTGAAACAAGCTAT GGGTAATATCATGGTTCATACCAAATATTACATAAGTATTAT
• Tissue: flowers
• Gene name: LI_gene_81573;
• Additional information: details;

Expression of Ll_transcript_38537

FPKM

• FPAB: 0.7
• FPNAB: 0.4
• LF1: 0.8
• LF2: 0.7
• LF3: 0.8
• LF4: 1.6
• UF1: 0.2
• UF2: 0.6
• UF3: 0.6
• UF4: 0.4

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_38537

• Blastp: NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic from Lycopersicon with 96.55% of identity
• Blastx: NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic from Coffea with 93.77% of identity
• Eggnog: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity)(COG1007)
• Kegg: Link to kegg annotations (3950395)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (YP_009115458.1)
• Pfam: Proton-conducting membrane transporter (PF00361.19)
• Rfam: Intron_gpII (RF00029)
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;