Ll_transcript_145163

• Id Trinity: FTRINITY_DN59003_c3_g1_i5
• Name Transcript: Ll_transcript_145163
• Sequence: AATAAAGTGATACCTTGCACTTAGACTAAATATTGGGTATATAAAACATAATCGATTAGAAATAATTGAATCGCCCGAGGCAAAAATAAGCCTCCCGCCA AGTTGATTCCGCCACTGTCACCACACCAATAAAAATCAAAGAAAGTGCAGTGTGGTGTAGAATCGAAGAAAGCGTTTGAAATGGGGATTCATGGTTTGTT ACCACAATTGAAATCGATAATGGTTCCAATTCACATCAAGGACCTTAATGGTTCTTCCGTTGCAATTGATACCTATTCCTGGCTTCACAAAGGAGCATTA TCTTGTAGCACTAACCTTTGCAAAGGGATTCCCACTACTAGGCATATTGAGTATTGTATGCATAGAGTGAATTTGTTGCGACATTTTGGTGTTAAACCTG TTCTTGTGTTTGATGGAGGTCTTCTACCTATGAAGGGTGATCAAGAGAATAAGCGTGCTAGGGCAAGAAAGGAAAATTTTGAACGTGCAGTTCAACACGA GTCAGATGGAAATTCCACTGCTGCTTTTGAGTGCTACCAGAAAGCCGTTGACATTTCACCTGTGATTGCACTTGATCTAATTCAGGTATTGAAGCGGGAG AATGTGCAATATATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTACCAAACAAGTTGATGCAGTTATAACTGAAGACTCTGATC TTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTACTCAATGCTAGAAAAGAATAAGGAGCTCAG TTTTGAAGGGTTCAACAGGCAAATGCTCCTTGAAATGTGTATTTTGAGTGGCTGTGATTATCTTCAGTCCTTGCCAGGTATGGGCCTCAAAAGGGCTCAT GCAATCATAAAAAAATTTAAAAGTTACGACAAGGTTCTGAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAAAAGG CTATACTGACTTTCCAATATCAACGGGTTTATGATCCAATTAATGAAGATATTGTTCATTTGTCTACTATACCTGATGATAGTGGTGACGAGTTAGACTT TGTAGGCCCATATCCTTTTTTCTAAGGTTGCCTTACCATTTCATATGAATATAATTCTGCTCCATTTTGTTCAACTTTCTTACTTGAAGTCATACCTTAA CCTGTGATACACCGATGCCAAAAAATATTGCACAAGGTATAGCAAAAGGGGACCTCGATCCATTTACCAAAATGCCATTTGAGAAATTTCAGGGACAAAA TCTTACGGCTAAATTGGCAAATGCGGGAACTTTTCAATTCAAAACTCCTGAAAGTGTGAAGAAAAAGATTGATCTACCTGTGCAGAAGAATCTCTTGACC AATTATTTTTGTTTTGCGTCTCTTGAAGCGAAAAGGAACTTCAGAGCACCTCGTATATCACCTACAACTGCTAATGAAAGCACCTTTGATTTCTCTTCTG GTGGTCCCTTGGAACATGAGACTTCAGAAGCCACTGCTAGTGGAACAAAGAACTCTGCTACATCTGTAGTTTCTTTTGAGAAATGGGGCAGTAGCCCTCT CACTAGCAACCATATTGAAAACAGCTTATCCTCCACAGTTTCAGAATTCACAGAATCTCCAAGTCGTGTGTATATGGTGGATGAGAAGAAGATAAGTACT GAACATACAATACTGCGACAACCCAGGCAGCCAATTCATAAACCTTGTCTGGGGTCGCATAAGGAGGATGAACGCACTAATGCCGAATACACAGTTGAAG TTAAAACCAGGGAGGAAACAAAGGTAATTGTAAGGAGTGCATATTTTCAGCACAAGCAAGTAGAAAATCACGATTGTGATGAGGTACAAGATCACCTTCC CAAATCTGGCATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGAAAATAACGATTGTGATGACAAACAAGGTCACCTCTCTAAAGCTGGCAACAAG GTAATTGTAAGGAGTCATTATTTTCAGCACAAGGAAGTAGAAAATAACGATTGCAATGAGAAACAAGATCAAGTGTCCAAATCTGGCATTGTAAGGAGTG CTCATTTTCAGCACAAGCAAGTAGAAAATAATGAGTGCAATGAGAAACATGATCACCTGCCCAAATCTGGCACTATAAGGAGTGCGTATTTTCAGCACAA GCAAGTAGAAAATAATGACAGTGATGATAGACAAGATCACCTTTCCAATGCTGGTGATAAGATAATTGTAAGGAGTCGTTATTTTCAGCACAAGGAAGTA GAAAATAATGTCTGCGACAAGAAACAAGATCACCATTACAAACCTGGCACTGTCAAAGGTGAGAAAAGAAATGCCATATCTGACAGATGTATGGAGAATA AAGACTTGAAACGAAAGATCTCCAATGATAATATTCAAACTGAAAATTTGCAGCCCATCCAAATGCATCATGCTTCTCCTCATAATAATGGTAACTGTGA TGAACATGTTGATAGACCATCTACAGAGAACAATACTGATGAAAAATTCAGTGCAAACATTTCTCATCTAGGCCATTATTCAGAAATAGCTGAGAAGTCT GTGGAAAGGTTTGTCTCTGTGATATCATCCTTTAGATGCTCTTCTGGCTCCCGTGCCAGTGGTCTCCGTGCTCCTATGAAAGATGTTCGGAATACTTGTG ATAACAGGCCAACAACCGTAGACTTCAGACAATATACATATGAGCCAAAACAGAAAAAAACTAGAAGAATCGGTCATGGGAGTTAATCCAAGTTTGCTTA AGCAGGTCTTTACTTGATTGCGGCTTATGTCGGCCTTTGAACACCATTCTGGCAAGGCTCGAATCATGTCGAGTTAATTTTTCTTCTGCAACTTTAAGTT GTATTCCTATTTACTGATGAACTAGTTATCTGTTGTGCTCTTCATTTGATACCCCACAGCTAGGATCAACTTGGCTCATGTGCATTGTTAGAGAAAGCTG TGGTTAGATAATTGCATATCACCAAGTGTATTACGGTTTTGTCCTCTCATTTATTGACACAAACTGAAGAATAGGAATGGTTTAATTTTTTCCTGACCAG TCCTTCGCAATTTAGAAACTGCAACTCAGTTTTCACAGTGCATTATGTAACATTTTCCGAAGAGAAATAATATCTTAGGCAAATGATTACTTGTGCCATA AAGGTCTATTTGCGAGTTGTTTTGGATGAGAAAGAATGAAAATGGAAGGCTTCATAACTATGAAATGCACTTATGAGATGACATTGAAGCTTTATCTTTT CCTTATTTCCCTTTCAAAACTCAAATCACAAATGGACATAAAGATATTGAGCGAGGAAAGTAACACCCAATATGCTTTGTATTTTGACACAATGCAATAG CTGTTAATGGAGAAGAATTAGTTTAAAAA
• Tissue: flowers
• Gene name: LI_gene_81990;
• Additional information: details;

Expression of Ll_transcript_145163

FPKM

• FPAB: 0.2
• FPNAB: 0.1
• LF1: 0.1
• LF2: 0
• LF3: 0
• LF4: 0
• UF1: 0.2
• UF2: 0.2
• UF3: 0
• UF4: 0.2

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_145163

• Blastp: Exonuclease 1 from Arabidopsis with 40.83% of identity
• Blastx: Exonuclease 1 from Arabidopsis with 77.42% of identity
• Eggnog: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity)(COG0258)
• Kegg: Link to kegg annotations (AT1G29630)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019444630.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;