| Id Trinity | FTRINITY_DN59003_c3_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_145164 |
| Sequence | AATAAAGTGATACCTTGCACTTAGACTAAATATTGGGTATATAAAACATAATCGATTAGAAATAATTGAATCGCCCGAGGCAAAAATAAGCCTCCCGCCA AGTTGATTCCGCCACTGTCACCACACCAATAAAAATCAAAGAAAGTGCAGTGTGGTGTAGAATCGAAGAAAGCGTTTGAAATGGGGATTCATGGTTTGTT ACCACAATTGAAATCGATAATGGTTCCAATTCACATCAAGGACCTTAATGGTTCTTCCGTTGCAATTGATACCTATTCCTGGCTTCACAAAGGAGCATTA TCTTGTAGCACTAACCTTTGCAAAGGGATTCCCACTACTAGGCATATTGAGTATTGTATGCATAGAGTGAATTTGTTGCGACATTTTGGTGTTAAACCTG TTCTTGTGTTTGATGGAGGTCTTCTACCTATGAAGGGTGATCAAGAGAATAAGCGTGCTAGGGCAAGAAAGGAAAATTTTGAACGTGCAGTTCAACACGA GTCAGATGGAAATTCCACTGCTGCTTTTGAGTGCTACCAGAAAGCCGTTGACATTTCACCTGTGATTGCACTTGATCTAATTCAGGTATTGAAGCGGGAG AATGTGCAATATATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTACCAAACAAGTTGATGCAGTTATAACTGAAGACTCTGATC TTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTACTCAATGCTAGAAAAGAATAAGGAGCTCAG TTTTGAAGGGTTCAACAGGCAAATGCTCCTTGAAATGTGTATTTTGAGTGGCTGTGATTATCTTCAGTCCTTGCCAGGTATGGGCCTCAAAAGGGCTCAT GCAATCATAAAAAAATTTAAAAGTTACGACAAGGTTCTGAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAAAAGG CTATACTGACTTTCCAATATCAACGGGTTTATGATCCAATTAATGAAGATATTGTTCATTTGTCTACTATACCTGATGATAGTGGTGACGAGTTAGACTT TGTAGGCCCACCGATGCCAAAAAATATTGCACAAGGTATAGCAAAAGGGGACCTCGATCCATTTACCAAAATGCCATTTGAGAAATTTCAGGGACAAAAT CTTACGGCTAAATTGGCAAATGCGGGAACTTTTCAATTCAAAACTCCTGAAAGTGTGAAGAAAAAGATTGATCTACCTGTGCAGAAGAATCTCTTGACCA ATTATTTTTGTTTTGCGTCTCTTGAAGCGAAAAGGAACTTCAGAGCACCTCGTATATCACCTACAACTGCTAATGAAAGCACCTTTGATTTCTCTTCTGG TGGTCCCTTGGAACATGAGACTTCAGAAGCCACTGCTAGTGGAACAAAGAACTCTGCTACATCTGTAGTTTCTTTTGAGAAATGGGGCAGTAGCCCTCTC ACTAGCAACCATATTGAAAACAGCTTATCCTCCACAGTTTCAGAATTCACAGAATCTCCAAGTCGTGTGTATATGGTGGATGAGAAGAAGATAAGTACTG AACATACAATACTGCGACAACCCAGGCAGCCAATTCATAAACCTTGTCTGGGGTCGCATAAGGAGGATGAACGCACTAATGCCGAATACACAGTTGAAGT TAAAACCAGGGAGGAAACAAAGGTAATTGTAAGGAGTGCATATTTTCAGCACAAGCAAGTAGAAAATCACGATTGTGATGAGGTACAAGATCACCTTCCC AAATCTGGCATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGAAAATAACGATTGTGATGACAAACAAGGTCACCTCTCTAAAGCTGGCAACAAGG TAATTGTAAGGAGTCATTATTTTCAGCACAAGGAAGTAGAAAATAACGATTGCAATGAGAAACAAGATCAAGTGTCCAAATCTGGCATTGTAAGGAGTGC TCATTTTCAGCACAAGCAAGTAGAAAATAATGAGTGCAATGAGAAACATGATCACCTGCCCAAATCTGGCACTATAAGGAGTGCGTATTTTCAGCACAAG CAAGTAGAAAATAATGACAGTGATGATAGACAAGATCACCTTTCCAATGCTGGTGATAAGATAATTGTAAGGAGTCGTTATTTTCAGCACAAGGAAGTAG AAAATAATGTCTGCGACAAGAAACAAGATCACCATTACAAACCTGGCACTGTCAAAGGTGAGAAAAGAAATGCCATATCTGACAGATGTATGGAGAATAA AGACTTGAAACGAAAGATCTCCAATGATAATATTCAAACTGAAAATTTGCAGCCCATCCAAATGCATCATGCTTCTCCTCATAATAATGGTAACTGTGAT GAACATGTTGATAGACCATCTACAGAGAACAATACTGATGAAAAATTCAGTGCAAACATTTCTCATCTAGGCCATTATTCAGAAATAGCTGAGAAGTCTG TGGAAAGGTTTGTCTCTGTGATATCATCCTTTAGATGCTCTTCTGGCTCCCGTGCCAGTGGTCTCCGTGCTCCTATGAAAGATGTTCGGAATACTTGTGA TAACAGGCCAACAACCGTAGACTTCAGACAATATACATATGAGCCAAAACAGAAAAAAACTAGAAGAATCGGTCATGGGAGTTAATCCAAGTTTGCTTAA GCAGGTCTTTACTTGATTGCGGCTTATGTCGGCCTTTGAACACCATTCTGGCAAGGCTCGAATCATGTCGAGTTAATTTTTCTTCTGCAACTTTAAGTTG TATTCCTATTTACTGATGAACTAGTTATCTGTTGTGCTCTTCATTTGATACCCCACAGCTAGGATCAACTTGGCTCATGTGCATTGTTAGAGAAAGCTGT GGTTAGATAATTGCATATCACCAAGTGTATTACGGTTTTGTCCTCTCATTTATTGACACAAACTGAAGAATAGGAATGGTTTAATTTTTTCCTGACCAGT CCTTCGCAATTTAGAAACTGCAACTCAGTTTTCACAGTGCATTATGTAACATTTTCCGAAGAGAAATAATATCTTAGGCAAATGATTACTTGTGCCATAA AGGTCTATTTGCGAGTTGTTTTGGATGAGAAAGAATGAAAATGGAAGGCTTCATAACTATGAAATGCACTTATGAGATGACATTGAAGCTTTATCTTTTC CTTATTTCCCTTTCAAAACTCAAATCACAAATGGACATAAAGATATTGAGCGAGGAAAGTAACACCCAATATGCTTTGTATTTTGACACAATGCAATAGC TGTTAATGGAGAAGAATTAGTTTAAAAA BLAST |
| Tissue | flowers |
| Gene name | LI_gene_81990; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_145164
| Blastp | Exonuclease 1 from Arabidopsis with 62.19% of identity |
|---|---|
| Blastx | Exonuclease 1 from Arabidopsis with 62.19% of identity |
| Eggnog | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity)(COG0258) |
| Kegg | Link to kegg annotations (AT1G29630) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444630.1) |
| Pfam | XPG N-terminal domain (PF00752.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |