Ll_transcript_146691

• Id Trinity: FTRINITY_DN59018_c0_g1_i1
• Name Transcript: Ll_transcript_146691
• Sequence: CTCTCACACACACACTCTCTCTCTCTCTGGTTCAATTCAATCATGAAACGCTCCATCGATGACGTCACTAACACCTCTGCATCCAAGCCTGTCTTCCTCA CCAAAGCCCAACGCGAAGAGTTAGCCCTTCAACGCCGCCAACAACAAATCGCCGATCAGAAGCGCCGCCATGAAGACATCCTCTCCACCACAGATCCCAA ACCCTCCTCCTCTGACCGCCGAGAACGGGAAAGGGACAGGGATAGGGACAGGGATAGGGATAGGGACAGGGACAGAGACAGGGATAGGGATAGAGAACGC GAACGTGAGCGAGAGCGGGAAAGAGAACGCGACAGGGCTCGCGACAGGGCTAGGGAAGATGAGCGAAGGAACCGAATGGAGAAATTGGCTGAGCGTGAGC GAGAGAAAGAGCTAGATGCGATAAAAGAACAGTACCTTGGTTCAAAGAAACCTAAAAAACGAGTCATCAAACCTAGCGAGAAGTTCCGTTTCTCATTCGA TTGGGAAAACACCGAGGACACTTCCCGCGACATGAATGTCCTTTACCAGAACCCTCACGAGGCTCAACCCCTCTTTGGTCGTGGTTTTCGTGCTGGAATG GACCGCCGTGAGCAGAAGAAGCTCGCTGCCAAGAACGAGAAGGAGATGAGGGAGCAAATGCGGAAGAAGGATGGTATTGAGGAGAAGCCCGAGGAGGCTG ATGCCCAACGCCGAAAGGAGGCTGCCGCTGATTTATATGATACATTTGACATGAGAGTAGACCGTCATTGGAGCGAGAAGAAGCTTGATGAAATGACCGA GCGTGATTGGCGTATATTCAGGGAGGATTACAACATCTCCTACAAGGGTTCCAGAATTCCACGCCCTATGCGTAGCTGGATTGAGAGTAAGTTGAGCCTT GAGCTTCTGAAGGCCGTCGATAAGGCTGGTTACAAGACCCCTTCTCCAATTCAGATGGCTGCCATTCCTCTTGGCTTGCAGCAACGCGATGTTATTGGCA TCGCTGAGACTGGTTCTGGGAAGACTGCTGCTTTTGTTCTTCCTATGTTGGCTTATATCAGTAAGCTTCCCCCCATGAGCGAGGAGATTGAGGCAGAGGG TCCATATGCTGTTGTTATGGCTCCCACACGTGAGCTAGCACAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATTTGGGATTTAAAGTTGTTTCC ATTGTTGGTGGGCAGTCCATCGAGGAGCAAGGGTTTAAGATTAGGCAAGGTTGTGAGATTGTTATTGCCACTCCCGGTCGTTTGATTGATTGCTTGGAAA GGCGCTATTGTGTTCTAAACCAGTGCAATTATGTCGTTCTTGATGAGGCTGATCGCATGATTGATATGGGGTTTGAGCCCCAGGTCATGGGTGTCCTGGA TGCTATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAAGAGCTCGATGAGAAGAAGATTTATAGGACCACATATATGTTCAGCGCCACCATGCCA CCCGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTAACCATAGGCACTGCTGGAAAGGCCACTGACTTGATCAGTCAGCATGTGA TCATGGTGAAGGAATCTGAGAAATTTCATAAGCTTCAGAGGTTGCTGGATGAGCTTAATGACAAGACAGCAATTGTATTTGTTAACACCAAGAAGAATGC CGATATGGTTGCCAAGAATTTGGATAAGGATGGCTACCGTGTGACCACTTTGCATGGAGGGAAATCACAGGAGCAGAGGGAGATTAGTCTCGAAGGATTT AGGACCAAGAGATATAATGTTCTTGTTGCAACGGATGTTGCTGGACGTGGGATTGACATACCCGATGTGGCTCATGTCATAAACTATGATATGCCTGGGA ATATTGAAATGTACACACATCGTATTGGGCGTACTGGCCGTGCAGGAAAGACTGGTGTGGCTACAACATTCCTGACACTTCATGACACTGATGTCTTTTA TGACTTGAAGCAGATGCTTACTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCACGAGGCTTCAAAATTCAAGCCAGGAAGTATTCCTGATAGA CCTCCAAGAAGAAATGACACTGTGTTTGCACACTAGAGAACTTTTATTGATTAGGTAGTTGCTTGTGGACTGCTTATTGTCTCTAGCAGCAATTGATAAT ATTGAAGCAGAACCTTTGATTAATTTTTGTCATTTGCCTTTAGCATTTATGCTACAATGGTTGTTATCTTTTCTGATAATGCTTATTATGGCTTTATCCA GGTTCACCAGGCTGTGCATAAATTTTCTAGGTCTGTTAGATTATGTTTCTCCCACCTAGTTAGCCTAAGACTTGGTTGTTGTTGTTGGTTGTTAGATTAT GTTTTTATATTGTTTGGCATTAACTGGCTTCTGAAATTTTAATGTTAGATTATGTTTTTATATTATAGAGTCTATATATATAACACCTTGTAGTAGGAGA TACCTTAATGCTTAAAGCATGCCTTACTGAAGGAAAAGCATTAACATAAGGTGTGGAAAACAGTTTTGACTATTTTGTATTTATATACTTTTTATTTAAT CTTTTTAACATTCGG
• Tissue: flowers
• Gene name: LI_gene_82121;
• Additional information: details;

Expression of Ll_transcript_146691

FPKM

• FPAB: 13.2
• FPNAB: 19.6
• LF1: 11.8
• LF2: 10
• LF3: 12.3
• LF4: 14
• UF1: 10.7
• UF2: 9.2
• UF3: 13
• UF4: 13

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_146691

• Blastp: DEAD-box ATP-dependent RNA helicase 21 from Arabidopsis with 87.71% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 21 from Arabidopsis with 88.75% of identity
• Eggnog: ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1 5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4 U6 base-pairing interaction in the U4 U6 U5 snRNP, facilitating the first covalent step of splicing(ENOG410XNVG)
• Kegg: Link to kegg annotations (AT2G33730)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019463889.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;