| Id Trinity | FTRINITY_DN59057_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_147083 |
| Sequence | GAACAAAAGACACCTGAATGAGTGTAATAGCTATATATAGAATCATCTTCATAGTTTACCAATGATTCTGTATCTCACATCAAAATTTCATGATTTTCAG AAATCCAATTAGGGTTTTCAAAAGGGTTCATCTCTTCTTCCACTATAAGCTATAAATTGAGAATTGAAATAGCTTCTTCAATTCTCATAATCAACAAAAC TTGTGTAGTGAAGTCTTTGGTTTCGGTCTTCGCTCTCTTATTTTCTTCTCTGACACTCTCTCATGGCCGATGATATGGAAATCGATTCACCCTCTGGTTC CCAAACCCTCAAACCCCGTGATCGAATTGTTAAGAAGCTTGCTCACTTTGGAGTTCCTGAGGAGCAGCTTGACCAGCCTGGTTTGGTTGCTTTTGTTAAG GATAAGAGGGAGTTGATACCTGAGCTGGTGTCTGTTATATTGCCTACTGATGTGGAAGTGGGTGAAGCATTGCCGGATTCTAAATCGGGCTCGAAGAAAT TGCCGTTGGGTGTTACTATGAAGAAGACTTTCCGTCATAGCATGGTGTGGTTGCAGTGGCTAATGTTTGAGGGTGATCCTGGTGCTGCCCTGAAAGGCCT TTCTGAGATGTCTGTTGGGCAGAGGGGTGTGTGTGGGGATGTTTGGGGACATAATGATATAGCTTACAGGTGCAGGACCTGTGAGCACGATGGGACTTGT GCAATTTGTGTTCCTTGTTTTGAAAATGGGGATCACAAGGGCCATGATTACTTTGTTATATACACAGGTGGTGGGTGTTGTGATTGTGGGGATGTGACGG CGTGGCAACGCAAGGGTTTCTGCTCGAAGCATAAGGGTGTCGAGCAGATACAGCCTCTTCCAGAGGAATTATCAAACTCTGTTGCACCTGTGCTTGGTTC TCTATTTATTTGTTGGAATGCCAGACTAAAGTTTGCAAGTGATTCTGCCATGTCTGCAGAAAGAAAGAAGGCTGGAAATGAGCTAACTTTTGCTGTAGTT GATATGCTTTTAGAATTTTGCAAGCATAGTGAGAGTTTGCTAAGTTTTGTTGCTAGGTCATTGTTCTCTTCTACTGGTTTATTGAACATCCTAGTGAGAG CTGAGAGGTTTTTAGCTGATGTTGTTATAAGGAAACTCAATGAGCTACTCTTGAAATTATTGGGTGAACCTATTTTTAAGTATGAGTTTGCCAAGGTTTT TCTCGCTTACTATCCAACTGTTGTAAATGAAGCCATAGAAGAGTGCAGTGACCAACCTCTAAAGAAGTACCCTCTGCTGTCCACATTCTCCGTGCAAATA CTTACAGTGCCCACCCTTACCCCACGTCTTGTGAAGGAAATCAACCTACTAGCCATGCAGTTGGGATGTTTAGAGAAAATTTTCAATTCTTGTTCAGAGA ATGGTCGCTTGCAGATTTCCAACTGGGCAAATTTGTATGAGACAACAATATGTGTTGTCAAAGATATTCGTTTTGTTATGAGCCATGTGGTGGTGCCCAA ATATGTAACCAATGACCAGCAGGATATCTCAAGAACATGGATGAGACTCCTGTCCTTTGTGCAAGGGATGAACCCTTCGAAGCGAGAAACAGGTCAGCAT ATAGAAGAAGAAACTGAAAATGTCCATTTGCCTTTTGTTTTAGGCGACTCTATTGCCAATATTCATTCTCTATTGGTGGGTGGGGCATTTTCTGATTCCA GCAAGGGAGGGATGGAGGATGAAATTGTTTGGATCTCAGAAAAGCATGAAACAGATGATGGAGATAATGTAAGAAATACGAAGGTAGGGCGGCTATCCCA GGAAAGCTCTGCATGTTGCGTAACAAGTAATAACAGCGCCTTTGCTTCACCAAAGGTTCCTGAGATAGAATCTGATGCCTCTTCTCCTTTTGATCTTCCA CATTCTGTCACTTGGTTGATATATGAGTGTTTAAGGGCTATTGAGCATTGGTTGGAAGTTGAGAATACCCCAGGTTCACTTCCTAACATGTTTAACAGTG ATAGTGTCTATGATGGCAATTATTCAGCATTTAAGAGAACAATATCTAATTTCAGAAAGGGTAAATATACTTTTGGTAAGCTTGCAAGTTCAAGCGAAGA CTATGGTAAGCGATGCTCTGATTTCAGTCTTGATGGCTCGGAAATGGGTAAAAATATAGTGAAGGATGGTAAACTGAAAACAAATGGTGAAATTGATTCT GAAAACACCAGCACTTATCTTGGTTTTGATAATAATGCAACGGAAGAGGATTTTCCTGCAGAATCAGATTGTCTACGTTTTTTATCGTCACCTGATTGGC CACATATTGTCTATGATGTTAGTTCACAAGATATATCTCTACACATTCCATTACATAGATTACTATCTATGTTGTTACAGAAGGCACTAGTAATATATTT TAATGAATCCAAAGTGCATGATGTGACCGATGATTGTTCTACTAACTCATTGTCAACAATCCGCGTTGACTTCTTCGGACGTGCTTTACGTGGAACTCAT CCTCATGGTTTCTCTTCCTTTATAATGGAGCATCCACTGCGGATTAGAGTATTTTGTGCTGAAGTTCATGCTGGAATGTGGCGAAAAAATGGAGATGCTG CTTTACTATCTTATGAATGGTATAGATCAGTACGCTGGTCTGAACAAGGTCTGGAGCTTGATCTATTTCTTCTTCAGTGTTGTGCTGCATTTGCTCCAGA AGATCAATATGTCAGTAGAATTCTAGATCGCTTTGGATTATCAAACTACTTGTCTCTGAATCTTGAACGGTCTAGCGAGTATGAACCTGTTTTAGCTCAG GAAATGCTTACTCTTATTATTCAGATAGTAAAAGAAAGGCGCTTTTGTGGGCTAACTACTGCTGAAAGTTTGAAAAGAGAACTAATTTATAAGTTAGCCA TTGGAGATGCTACTCATAGTCAATTAGTAAAGTCTCTTCCTCGTGATCTCTCCAAGTTTGAACAGCTTCAAGACATTTTGGATACTGTTGCTGTTTATTC TAATCCATCTGGCTTTAATCAGGGCATGTATTCTCTGAGGTGGCCATTTTGGAAAGAATTGGATTTGTATCATCCTCGTTGGAACTCGAAGGATTTACAA GTTGCTGAAGAAAGATACGTACGTTTCTGTGGTGGCTCTGCATTAACTACTCAGTTGCCCCGGTGGACCAACATTCATCCTCCTCTGAAGGGGATAGCCA GAATAGCCACCTGCAAAGTTGTTATGCAGATTATCCGTGCAGTACTATTCTATGCTGTTTTTACTTTTCAATCAGCTGAGTCTCGTGCTCCTGATGATGT TCTTTTACCTGCACTGCATTTGCTATCATTATCATTAGATATATGCTTTCAGCAAAAAGAATCTAGTGAGAATATATATCATGATGTGGCACAAATTCCT ATAATAGCCTACTCTGTAGAAATTATTGATGCAAATGCTTTTTATGGTGTTGGCGAACAAAGCTTGTTGTCTCTTCTTGTTGTGTTGATGGAAATGAACA GGAAGGAAACTGCAGACAACTTTGTAGAAGCAGGTGGTTTCAGTGTGTCATCTTTAATTGAAAGTTTACTGAAGAAATTTGCCGAGATTGACCACAGGTG CATGACTAAGTTGCAAAAACTTGCCCCTGAAGTTGTGAGTCATATTTCTGAACGCTGTCCAACTAGAGACTTAAGTGTCTCATTTTCAGCTTCTGATAGT GAGAAACGCAAAGCAAAAGCTCGAGAGAGGCAGGCTGCAATAATGGAAAAGATGAGAGCCCAGCAAACAAAGTTTTTGGCCAGCATTGATTCCACTGTTG CTAATAGTTCTCAAGTTGGTCATCAAGAAGGTGATTTTGACACTGATGCTGAAGAATCTAAACAAGTTGTTTGCTCTCTATGCCATGACCACAGTTCAGA ACATCCAATTTCATTTTTGGTTCTTCTTCAGAAATCTAGGCTTGTGAGTTCTGTTGACAAGGGTCCCCCATCTTGGGACCAACTTTGCCGATCAGATAAA CAACACATGCCTACCACCACTAAGATGACAGATACATCGGTTATAAACTTGACCTCAAGTAGTTCAGGATCAACTTCATCTTCCCACTTAACTCAGTTAG TTCAGATTGCTGCCAATGAACTAGCTTCTAGTGGGGATCCTGGGGAAGTTAATGCTTTTCTGCAATATGTCAAGAATCAGTTCCCATCTTTGGGAAATTT TCAGCTCCTAGACACATCTATTGATGAAAAAGAAAAGACACCATATACTTTTGACAATTTAGAACATGGTATGTACTTCTCCATTCGGGAGGAAATGCGT GATCTTGCGATGTCCTCAAATATGATGAATGAGGATGAGAAAGTTCCAACAACCGGAGGGGATACAAATACTATAATAGATACCGAATCTGTATTGCTCG GGAAATATACTGGTGATCTTGTGAGAGAGATGTCAGAAAGCTCTTCCGCATCTGAAATTGCTTGTACTGAGAATACTTATGTCGAATCGACAACACAGCA TCCATCATATGATGGATTTGGCCCTACAGATTGTGATGGAGTTCATCTTTCTTCATGTGGGCATGCAGTACATCAAGGGTGTCTTGACCGATATTTGTCT TCATTAAAAGAAAGGTATATTTCATCTATAGTTATCTTATATTTATGATCTCTGAATGCCTCTCCTAGTCACCTTGTTTACCACATTTAAAGTTTCTTGG ACTGGTCTTTTGAGATCAACCAACCCTTGTGCAAATCCTTGTTTTTAACTGTTGCATTCTTCCGTAAATTTACTCCAAATAAGTGATGTTTAAAATTTTA AATTCATTGGCAGTAATGCTTTGATTTCTTTACTCTATTTCATGGAATGAACATTCTTGTGTTTACATGAAGAATTTTGCAGAACAGGGAAATTCACATT CTTTACACTGTCTAATTATTTTGCTAAGAATAAATTGAACAAAAGAAGCCTAAAGCCCTAAAGTAAACTCAAGACCTCCTTCTTGACAATTTTGATCAAC TCCTGAAATAAGTTTGAACAAGGAATCATGAAGACGAAAATTTTAAGCTGTCACCTATTCATAAACACAACTCAGTCCTTCAATTAATCAAATCTGATGA ACCTGATCATGAATCAATATCTTGCTATTCTTGCAGTCATGGATATGTATACACACACGTGCAGAAATGATAAAACTGTAATGAATAGATGATCAAATTT CTTCACATTGTAGGGACTAATATTGTTATTATGACTTAGTATATAAGATGCTTTAATAAGCTTTAAGACTGTTCTCACAGATTTGTCAGAAGAATTGTTT TTGAAGGAGGACATATTGCTGACCCCGATCAGGGAGAGTTCCTCTGCCCAGTGTGTCGCCGACTTGTAAATTGTGTCATGCCGACTTTACCTGGAGAATT ACAGAAGTCTTTTGAGCAGTCTATTGGCTTAAACATTGGTTCAATACATACAGAAGCCCCTTTAGGTGCATCGAGTGAAGTGACCTATTCACTCCGCCTT AAACAAGCTTTAAAGCTCTTGGAATCTGCTGCCAGTACAGTTGGGAAAGATAAATTCCTGAAAGCCATTCCTTTGCAGCAGATTGATAGAACTAGACCAA ATCTTGAAACTTTCTCCCGGGTGCTTTCTAAAATGTATTTCCCAGGCAAACAAGATGAGTTATCAAGATTTGCCAGATTAAACCACTCAATGATGATGTG GGACACTCTTAAGTACTCCTTGATGTCAATGGAGATTGCTGCACGTTGTGGAAGGACTTCTTTGACACCAAACTTTGCTCTTAGTGCCATGTATGATGAA CTCAAATCTTCGAGCGGCTTTATATTATCCTTGTTACTGAAACTTGTTCAAAAGACAGGGAGTAAGAACTCTCTTCATGTGCTTCAAAGATTCAGAGGTG TTCAGCTCTTTGCGGAATCAATTTGTTCAGGGATTTCCCTGCATCCTGCAAGTAATGACATGTCCGGTAGAGGTGATATGTTGTCTATCTTAAAGCGTAT TGGAAACGACATCTCAGACATCGACAAACGCTTTTGGAAACAGGCTTCAGATCCGATACTTGCTCATGACCCTTTCTCAACATTGATGTGGATTCTCTTT TGTCTACCATACCCAATTTTGTCATGTGAAGAGTACTTGTTATCCCTTGTGCATGTTTTCTATATAGTAGCTGTAACCCAGGCCATAATTTTGTATTATG AGAAATCTCAGCCTAAACCAAGTGAATCAGGCCTTTCAAATTGCCTGATTACTGACATATATAAAGTTATCAGTGAATCTGGATGTCGTCAGCAGTGCTT TGTGTCAAACTATTTTGATCCTAATGTTGATATTAAAAATGTAATTAGGAGGTTTAGTTTCCCTTACTTGCGAAGATGTGCGTTGTTATGGAAAATACTA TTTTCCTCTATCCCGGCACCTTTCTCTGATGAAGAAAATATGGTGGATAAATCATGGAATGCCCCAAATGACACAATGGACCGGGCTAATATTGAACTGT TTGAGGTCACCAAAATTGAAGAGCTTGAGCATATGTTTAAAATTCCCTCTCTTGATGTGGTTCTAAAGGATGAAGTTTCAAGATCTTCAGTTGCTATTTG GTGTCGTCGTTTTTTCAAGCAATCTGATTCTCATGGTATTCAGCGTAATTTGTATGTAACACCTGCAGTTCCATTTGAACTGATGAGATTACCAAATGTT TATCAGGATCTTTTGAGGAGGTGTATCAAACAGCGATGCCCTGAATGTGAATCAATTGTTCATGAGCCTGCATTATGCCTGCTGTGTGGTAGATTGTGTT CTCCAAGTTGGAAATCATGCTGCAGGGCAAGTGGCTGTCAAACTCATGCAGCAACCTGTGGAGCTGGCACTGGAGTGTTTCTGTTGATTAGGAGAACAAC AATCCTACTACAGAGATCTGCACGTCAGGCTCCCTGGCCTTCTCCCTATCTGGATGCTTTTGGTGAGGAGGATTCCGAGATGAGTCGGGGCAAGCCTCTT TACCTGAATGAGGAACGTTATGCTGCTCTGACCTATATGGTTGCTTCTCATGGTCTTGATCGTAGTTCCAAGGTTCTTGGCCAGACTACTCTCGGTAACT TCTTCCTGATTTAGTTCAACATTTACATGTTGAGTAATAATGTCAAGGTCCGATATGTGAATTAGTATCTCTTCTCTCTTTGCTTTCTTTCTCTCCTTTC CTGTCTTCTGAAGAATTGTGTCACCCTCTGAATGCAGAAATTTAGTGAACAGATCTCCGGAAGGTCGGAATTGGTTCTGGAAATGCTAATGTATTATGCA TATATATGACTAATAAAAAAATCCTAGTCCAAACTGTCTGTCATTCAGGTTTGCATGCTGTAAGCACTTTTTTTGTTCTTGTCGAATGTCTTAATTTTAT TGCTATTGGAAGGTTGTTTTCTACTTCTTGGATGATTGGATCTAGGTATTCAATTGCATCCTGTAAAAACTTGCGAAGTTATAATCAAATCTCTACTCAC TATTCGGCATAATTTTACTATGGTTTCAGTAGTATTTCAGTAAAAGCTATTTCATTTACCCATAAACCACATCCTATTTACAAATTCTTTAGTTTTCGGC ATTGAACTTCATCTTAATATCCCTTCATATATGCTTTGTCATCCTTTTCTATTCGTTAAACTGTCCTGGACGAAGACTGACTATGATTGATTGATTCCAA TAACCCATTAATTCTTGTTGCATCCCCTCCTAGGAATCTAGATTTGATTGTCTATTATGATTTTTTACTGTCAAAGTTCTCGAGGGACATGTCGGTCGAA CGCTTCCCTTGTTGGCTTAGAGGAGGTTTACATGGAGCAACAACTTGAGTTTGTTGCTTAGGATGTGGGGTTTAGTTTAAAGAGTGGAGACTTTTTTATG GCCCCAAGTCATTCAAATCAGAAATCTATTTTTTTTT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_82466; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_147083
| Blastp | E3 ubiquitin-protein ligase PRT6 from Arabidopsis with 49.38% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase PRT6 from Arabidopsis with 48.9% of identity |
| Eggnog | Ubiquitin protein ligase E3 component n-recognin 3(ENOG410XRM3) |
| Kegg | Link to kegg annotations (AT5G02310) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019412985.1) |
| Pfam | Putative zinc finger in N-recognin (UBR box) (PF02207.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |