| Id Trinity | FTRINITY_DN59142_c2_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_256726 |
| Sequence | CAACTTTTCTACCAACAATCCACAACTCTTAACTATATGAATATTGAAAAATAAGCCAAGAAAGCATGGAAGAAATGACAATGGCAATAGATAACTGTAG CCAGCAGAAGCAGCTTTCTCATCATGCTCTTCCATTTGCAAGAAGCTATCAGGTTGAAGCATTGGAGAAAGCTATGAAGGAAAACACCATTGTGTTCTTA GAGACTGGTGCAGGCAAGACTTTGATAGCCATAATGCTTCTCCGAAGCTATGCTTATCTTCTGCGAAAGCCTTCGCCTTACATTGCAGTTTTCTTGGTTC CGAAAGTTGTGTTGGTATCTCAACAAGCTGAAGCGGTGAAAGTGCTCACTGATTTAAAAGTGGGAATGTATTGGGGAGAAATGGGAGTTGATTACTGGGA TGCTTCCACCTGGAACAAAGAATTTGAGAAACATGAGGTTCTGGTTATGACCCCCGCAATATTGCTTAGGAGCTTGAGGCATAGCTTTCTCAAACTTAAC ATGATAAAGGTTCTAATAATGGACGAATGCCATCATGCTAGGGGTAGAGACCCTTATGCTTGTATCATGAGAGAGTTTTATCATGACCAATTAAAATCTG GTGTCTCTGATCTACCTCGGATATTCGGGATGACTGCATCTCCAATTAAGACAAATGTTGGGAATTCTGAATGGACCTTGGCAGAAAGTATTCACAAACT AATGACTCTAATGCATTCAAAGGTATATACTTGTGCAAGTGAAGCTATAACAGAGTTCATTCCAATATCAACCCCAAAATTCAAGTTTTACAGGGAAGAT GAAATTTCATATGTGCTATTTCAAGACTTAGCTGTTAAGATCAAGATGTTAAAACAGCAGGTGTGTAAAGTTAAGGAGTTGTGCAATAATTCCCCAGGTG TTAAGAGTAGTAATAAGTAATAACTCTCTAAATCAATGCCAGATTGTCAACACTGTCATGTTATTATCTTTATTAGTCAATCATTTCTACTTTACAAGTT AAGCATTTTTTTTATCAGATATAGTTGATTATTTCCTTGAGGTTATTGACCATGGATATTCTGTTCCCTCAGCATGAACTCATCCTCAGAAATTCAGATT TCACAGAATCAGCTGCAGAGTCTGCACACAAACGAATCGAAAAGAGTTTTTATGCTATAATGTTTTGCTTGGATGAGCTTGGTGTTTGGTTGGCTTTAAG GGTTCTTATTTGCCCTTCTCCTGCTGCAGTTTTATTGTTTTGGTGTTTGTTCATTTTTCATGATTGGTTAATTTAGTTCGAACATTTTTTTCTTCACAGG CTGCAGAGTCTTTATTTTCCAATGAAACCGAATTATTTTCACGTGACAACTCTGGGGATGGACTTGTTAAAAGTTTCAGTCTTGCTACTGTGAATCATCT TACAACTTACTTACCGTCTGGTTCTCAGTGGTCTATTGGTGATAATATTAAATCTGACGTGGATATGGGGCTGTTAACCTCCAAAGTTTTCTGTCTTGTC GAATCTCTGCTTGAGTACAGGGATTTGAATAATATGAGATGTATCGTTTTTGTTGAAAGGGTCATAACAGCAGTTGTTCTTGAGACTCTTTTGAATGTCT TGCTTCCAAAATACAATAGCTGGAAGACTAAATTTATAGCAGGACACAATTCTGGATTGAAAAATCAAACTAGGAATAAGCAAAATGAAATTGTAGAAGA GTTTCGTGATGGATTGGTCAACATTATTGTTGCAACATCGATTCTTGAAGAGGGTTTAGATGTCCAAAGTTGCAATTTGGTTATTAGATTTGACCCGTGT CCCACAGTATGCAGTTTCATACAGTCCCGAGGTCGTGCCAGAATGCAAAATTCAGATTACGTATTAATGGTTAAGAGTGGGGATTCAGTTACGCATTCAA GACTAGAGAAATACCTTGCGAGTGGGGATATCATGAGGAAGGAGTCCCTGCGTCAATCTTCAATTCCTTGTGGTTCACTTGAACAACTTCCGGAGGAAGT TTATCGCGTTGAAAGCACTGGAGCCATTGTTAATCTTAGTTCTAGCATTACATTGATATACTTGTATTGCTCATGGCTCCCTTCAGATGGGTACTTTAAA CCATCTCCAAGATGGGACAAAGAGACCGGGACACTATATCTTCCCAAGAGCTGCCCTCTGCAGCAACCTATTCAGGTACAAGGTGACAAAAAATTCTCGA AGAATATTGCATGCCTCGAAGCATGCAAACAACTTCATAAAATTGGAGCTTTGACTGATAATCTCGTTCCAGATATTGTCGTGGAAGAAGCAGAGGTGGA TGCATTTGAGAATGAACCTTACACTGAGGAGCAACCAAGTTATGTACCATACCAATTGGTCAACAGCTTGTCAAAAAACGAGAAGAAAATTTACCACTGT TATTTGATCGAGTTGAAGCAAAATTTTAGCTATGACATCTCTGTCCGCGACATTGTGTTTGCAACAAGAAATGAGCTTGATCCAGTAATTGGAAGCACAC AATTTGAAATGTGCTTTGACAGGGGTACCCTATCAGTAAACTTGAGATGCTTTGGAACTGTTCATCTTTCCCCAAATGAGGTTCTTTTGTGTAAAAAATT CCAAGTCACTATTCTCAAGATTCTTGTAGATCGTAATATGGATAAGTTGGTAGCGAGTTTAGAATCTTTAAATAAACTCTATTTGGATGATTATCTTGAG ATTGATTATCTTCTGCTACCAGCCACTGCCATACAGCATAGACCTGCTATAATTGATTGGCTTTCCATTACCTCTACCGATCCATCAAAAATTACATGTG AGAAGCATACTCCAAAAGTATGGACAAAGAATGGTCTAGTGTGCCCTTGCATGCTACAAGACTCTTTGGTTTATACTCCTCACAATGGTCATATTTATAT GACCACTAACATAATGGAATTGGATGGGAACTCAACTCTGGAACTAAAGGATGGTGGAGTTACTACGTACAAGAAATACTATGAAGAAAAGCATGGCACT CGATTGCATTTCGAATACCAACAGCTGCTTCATGCAAGGCGCATTTTTGTCGTTAAGAATTACTCTCATGGACGCAGACAAGAGAAGGATAGAGCAGGCA AGAACTATGTTGAACTACCTCCTGAATTGTGCTGTATAATCATGTCACCAATATCAATTAGTACGCTTTATTCCTTCTCATTTGTTCCATCAATCATGCA TCGACTTGAGTCATTGTTTGGAGCCTACAACTTAAAAAAGACTTATTTGGACCATTGCATGCAAAATGAGATTCAAACAGTCAAGGTCTTGGAAGCAATT ACTACAAAAAGATGCAACGAGCCTTTTCATTATGAGTCTCTAGAGACTCTTGGAGATTCTTTTCTAAAATATGCAGCCAGTAAGGAGCTTTTTAAATCCT ACCAAAATCTTCATGAAGGTCTCCTTACTATGAAGAGGACAAAGATAATTTCTAATGCTGCCCTCAGTAAGTTTGGGTGCAATTGCGGCCTTCCGGGTTT CATACGAAATGCACCTTTTGATCCTCATACCTGGCTTATTCCTGGTGATAAATCAGAAAGTTTTAAATTAAAAGAGGAGTTGGATTCCAAGAGGGGGAAA ATTTATGTTAGTGGAAACCGAAAATTAAGACGTAAGATTATTGCTGATGTTGTAGAGGCACTAATTGGTGCCTTCCTTACCAGTGGTGGTGAAAAGGCTG CATTGTTGTTTATGGATTGGGTAGGCATTAAAGTAAATTTTGACATTATACCCTACGAGAGACTCTTAAGCATTCAACCAGCGAAGCTGGTTAATATCAA CTTTTTAGAATCTTTATTGAAGTACTCATTCCGCGACGGTTCTCTTTTAGTGGAAGCTCTGACCCATGGCTCTTACATGCTGCCTGAAATTCCTAGTTGT TATCAGCGACTAGAATTTCTCGGAGACTCAATACTGGATTATCTCATTACTATGCATT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83180; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_256726
| Blastp | Endoribonuclease Dicer homolog 2 from Arabidopsis with 53.55% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 2 from Arabidopsis with 51.43% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G03300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426302.1) |
| Pfam | Helicase conserved C-terminal domain (PF00271.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |