| Id Trinity | FTRINITY_DN59142_c2_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_256739 |
| Sequence | CAACTTTTCTACCAACAATCCACAACTCTTAACTATATGAATATTGAAAAATAAGCCAAGAAAGCATGGAAGAAATGACAATGGCAATAGATAACTGTAG CCAGCAGAAGCAGCTTTCTCATCATGCTCTTCCATTTGCAAGAAGCTATCAGGTTGAAGCATTGGAGAAAGCTATGAAGGAAAACACCATTGTGTTCTTA GAGACTGGTGCAGGCAAGACTTTGATAGCCATAATGCTTCTCCGAAGCTATGCTTATCTTCTGCGAAAGCCTTCGCCTTACATTGCAGTTTTCTTGGTTC CGAAAGTTGTGTTGGTATCTCAACAAGCTGAAGCGGTGAAAGTGCTCACTGATTTAAAAGTGGGAATGTATTGGGGAGAAATGGGAGTTGATTACTGGGA TGCTTCCACCTGGAACAAAGAATTTGAGAAACATGAGGTTCTGGTTATGACCCCCGCAATATTGCTTAGGAGCTTGAGGCATAGCTTTCTCAAACTTAAC ATGATAAAGGTTCTAATAATGGACGAATGCCATCATGCTAGGGGTAGAGACCCTTATGCTTGTATCATGAGAGAGTTTTATCATGACCAATTAAAATCTG GTGTCTCTGATCTACCTCGGATATTCGGGATGACTGCATCTCCAATTAAGACAAATGTTGGGAATTCTGAATGGACCTTGGCAGAAAGTATTCACAAACT AATGACTCTAATGCATTCAAAGGTATATACTTGTGCAAGTGAAGCTATAACAGAGTTCATTCCAATATCAACCCCAAAATTCAAGTTTTACAGGGAAGAT GAAATTTCATATGTGCTATTTCAAGACTTAGCTGTTAAGATCAAGATGTTAAAACAGCAGCATGAACTCATCCTCAGAAATTCAGATTTCACAGAATCAG CTGCAGAGTCTGCACACAAACGAATCGAAAAGAGTTTTTATGCTATAATGTTTTGCTTGGATGAGCTTGGTGTTTGGTTGGCTTTAAGGGTTCTTATTTG CCCTTCTCCTGCTGCAGTTTTATTGTTTTGGTGTTTGTTCATTTTTCATGATTGGTTAATTTAGTTCGAACATTTTTTTCTTCACAGGCTGCAGAGTCTT TATTTTCCAATGAAACCGAATTATTTTCACGTGACAACTCTGGGGATGGACTTGTTAAAAGTTTCAGTCTTGCTACTGTGAATCATCTTACAACTTACTT ACCGTCTGGTTCTCAGTGGTCTATTGGTGATAATATTAAATCTGACGTGGATATGGGGCTGTTAACCTCCAAAGTTTTCTGTCTTGTCGAATCTCTGCTT GAGTACAGGGATTTGAATAATATGAGATGTATCGTTTTTGTTGAAAGGGTCATAACAGCAGTTGTTCTTGAGACTCTTTTGAATGTCTTGCTTCCAAAAT ACAATAGCTGGAAGACTAAATTTATAGCAGGACACAATTCTGGATTGAAAAATCAAACTAGGAATAAGCAAAATGAAATTGTAGAAGAGTTTCGTGATGG ATTGGTCAACATTATTGTTGCAACATCGATTCTTGAAGAGGGTTTAGATGTCCAAAGTTGCAATTTGGTTATTAGATTTGACCCGTGTCCCACAGTATGC AGTTTCATACAGTCCCGAGGTCGTGCCAGAATGCAAAATTCAGATTACGTATTAATGGTTAAGAGTGGGGATTCAGTTACGCATTCAAGACTAGAGAAAT ACCTTGCGAGTGGGGATATCATGAGGAAGGAGTCCCTGCGTCAATCTTCAATTCCTTGTGGTTCACTTGAACAACTTCCGGAGGAAGTTTATCGCGTTGA AAGCACTGGAGCCATTGTTAATCTTAGTTCTAGCATTACATTGATATACTTGTATTGCTCATGGCTCCCTTCAGATGGGTACTTTAAACCATCTCCAAGA TGGGACAAAGAGACCGGGACACTATATCTTCCCAAGAGCTGCCCTCTGCAGCAACCTATTCAGGTACAAGGTGACAAAAAATTCTCGAAGAATATTGCAT GCCTCGAAGCATGCAAACAACTTCATAAAATTGGAGCTTTGACTGATAATCTCGTTCCAGATATTGTCGTGGAAGAAGCAGAGGTGGATGCATTTGAGAA TGAACCTTACACTGAGGAGCAACCAAGTTATGTACCATACCAATTGGTCAACAGCTTGTCAAAAAACGAGAAGAAAATTTACCACTGTTATTTGATCGAG TTGAAGCAAAATTTTAGCTATGACATCTCTGTCCGCGACATTGTGTTTGCAACAAGAAATGAGCTTGATCCAGTAATTGGAAGCACACAATTTGAAATGT GCTTTGACAGGGGTACCCTATCAGTAAACTTGAGATGCTTTGGAACTGTTCATCTTTCCCCAAATGAGGTTCTTTTGTGTAAAAAATTCCAAGTCACTAT TCTCAAGATTCTTGTAGATCGTAATATGGATAAGTTGGTAGCGAGTTTAGAATCTTTAAATAAACTCTATTTGGATGATTATCTTGAGATTGATTATCTT CTGCTACCAGCCACTGCCATACAGCATAGACCTGCTATAATTGATTGGCTTTCCATTACCTCTACCGATCCATCAAAAATTACATGTGAGAAGCATACTC CAAAAGTATGGACAAAGAATGGTCTAGTGTGCCCTTGCATGCTACAAGACTCTTTGGTTTATACTCCTCACAATGGTCATATTTATATGACCACTAACAT AATGGAATTGGATGGGAACTCAACTCTGGAACTAAAGGATGGTGGAGTTACTACGTACAAGAAATACTATGAAGAAAAGCATGGCACTCGATTGCATTTC GAATACCAACAGCTGCTTCATGCAAGGCGCATTTTTGTCGTTAAGAATTACTCTCATGGACGCAGACAAGAGAAGGATAGAGAAGCAGGAAATAAATTTG TTGAACTACCTCCTGAGTTGTGTTGCATAATCATGTCACCGATATCGATTAGTACGATTTATTCCTTCTCGTTTGCTCCATCAATCATGCATCACCTTGA GTCACTGTTTGGAGCTTACAACTTAAAAAGTACGTATCTGAAACAGTGCATCCAAGATGAAATTCAAATTGCCAAGGTATTAGAAGCAATCACTACAAAA AGATGCAAAGATCCCTTTAATTATGAGTCTCTAGAGACTCTTGGAGATTCTTTTCTAAAATACGCCGCCAGTAAGGAGCTGTTTAAATCCTACCAAAATC TTCACGAAGGTCTACTTAGCGTGAAGAGGACGAAGATAATTTCTAATGCTGCCCTCTGCAAGTTTGGATGCAATAGCGGACTTCCGGGCTTCATACGAAA TGCGCCTTTTGATCCCCATACCTGGCTTATTCCTGGTGATAAATCGGAAAGTTTTAAATTAAAAGAGGAGTTGGATTCCAACAGGCCGAAAATCTATGTT ACCGGAAAACAAAAATTGAAACGTAAGATTATTGCGGACGTTGTAGAGGCACTAATTGGCGCCTTCCTTACCAGTGGTGGTGAAAGGGCTGCATTGTTGT TTATGGATTGGATAGGCATTAAAGTGAATTTTGACATTATACCCTATGAGAGGCACTTAAGCATTCAACCAGAGAAGCTGGTAAATGTCAACTTTCTAGA ATCTTTACTGAAATACTCGTTTCGCGACCGTTCTCTGTTAGTAGAAGCTCTGACCCATGGTTCTTACATGCTGCCTGAAATTCCTAGTTGTTATCAGCGA CTAGAATTTCTCGGAGACTCGATATTGGATTATCTTATTACCATGCATTTATATGAGAAATATCCAGGCTTGTCACCGGGGCAATTAACTGACATGAGAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83180; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_256739
| Blastp | Endoribonuclease Dicer homolog 2 from Arabidopsis with 54.58% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 2 from Arabidopsis with 52.43% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT3G03300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426302.1) |
| Pfam | Helicase conserved C-terminal domain (PF00271.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |