| Id Trinity | FTRINITY_DN59168_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_256343 |
| Sequence | GTGGTTTCCCAAGCGGTGCAGTTGGCAGCAGATAGTGGAGGACAGCTGGCCTCCTTGGACGGCTGGATTTGAGTTGGCGCCATATCTGAGGAGTGCATCC ACGGTCCAGATTTGGTCACAACTGTGGAGTTATTAGGAGCAGCTTTTGTGGCAGTAATTATAGGCTTTTGGAACCGTGTAGCAGAGGTGTGCAAAGAATC ACACGACTCATTAAAAACAACAGCATCCAACCGTGGAAATTGAAGTGGGTGCTCTGCACGAGGGAAAGTACTTGAAGATGCATTTGAATTCCGTGAAGGA GTGTTAATACTCCCTTTATGCTCCTTCAAAGTGCCATTTGAAAATTGCTTTCTCTCTCCACTCGGTTCACTCTTAGAGAAAAAAATTTATTCTCTTTGTT TTTCCAACTCAGTGAGCATTTTGGGATTGTGAGTGGAAGAGATGTGCACCAATGTGGTGGCTGGTTGTTCATTACCCTCAAACATGTCCCTTCCCTTCTT CCCAAACAAGCCCTTTTCATTCGTCTCAAACACATGTGGTGGTGTTCTTCTTCCCTTGTTACGGTCATGCTCCAAAGTGGTGGTTGTCGTTTCATGACCC TCCGCTGGATTTAAAAACTCCAGAGGTAGAACAATGTTTTGTTTTCCGGTTGACCATGAAAATGTCGTAACACTGAGACGTGGAAAACCGGATGAATGCG AGAAGATTGTGGAAGATCGAGCTTATAAGCAACAGGTCCAACACGATGGAGCACAAAAAATGGGCCATAAAACAGACGGGCCAACTTTTGAGAGGTACGC CGCTGTACCGACTGTTGACGATACGGTTGGAGGTGGAGCAACACCCATTCTCCCGGTTCAAAGGGTGTCTAGAACAGAGGGATGTGAAACCGATCCAAGA ATGTGGTCTCTTAATGTCGGAGGAGGCCGACCATACAACTCTTCGAAAGGAGATATTTGTATGGATGAGTGCCGGTTGGTGTTATACCAGTACTCCGCCA AGGGAAGCTGGGTGAACCACTTGGTGGGATGTGATCCAGTGAAGCAGCGGAAGTATGTCTACAGCCCTCTATTCACAACCTCGGTTTGTCCGTCAGATTG AGGGTGGTAGGCGGTGCTGAAGCACAAGCAAGTACCCAGGAGCTTAAAAAGCTCCTTCCAGAATCCACTGACAAAGATTTTGTCCCTATCCGAGACAATG CTTTTTGGAACACCGTGAAGTTTACAAACTTCATTCAAAAAAGGCGAGCAAGGGTGTCTGCCGAGAAGTGAGTGGGTAGCCCAATGAAGTGAGCATACTT TGTCAGTCTATCCATAACTACCTAGATCACGGTATGGCCATGTGATGAAGGTATTTGTTATATTGGCAGATGGTACATTGACGAATGAAATCCTTGACTT TCTTAGTCAGTCCGGGCCAATAGCATGATGCAGCTAAACAGGCCACGATTGGTTTCCATCCAGAGTGACCTGCAGTAGGTGTTTCATGAAACTCTTTCAA CAATGAGATATGGAAATCGGCAACATCAGGTATAAAGATCCTGTTTTGAAATAACAATAGTCCTTGTGAATATGAAACTGTGCATGACCCTTCTCATATG TTTGAATTGTTGTTTGTCCTTCCGAGGTGGTGTAAAAGTGCCTGATCTTATCCAATAACAACGGAAAGGAGGTGGCTAGAGCACAAAAGAGGATTCCGTG ACCGCAAACATCTCATGCACATTAGGAGATGCACGTTGCATGCGCGGAGACATCTTTCTACTGAAAAAAGCAAGCGGATGACCTTCTTGGGAGAGGACGA CTCCAATGGCAGTAGCTGATGCGTCAGTCTCCACCACAAATAGCTTAGAAAAATCCGATAGATGCAAAACCGATATGGTAGTCATTGTTGTTTGTAATTT TGTAACGGCCTCCTGAGCCTCTGTGGGCCATGTAAAATTCTGTAACTTAAGCAAATCGGTGAGGGGAGAGGCGTGTGCGGCGTAGTTCTTGACAAATTTC CGATAAAAACCGGTGAGGCCAAAAAAACCCTGAGTGTTGTGTGAGACCGTGGTTGCGGCCAGTGAACCATAGCTTGTATCTTTTCTGGATCAAGTTACAC TCCACCATATGGCCTAAGTAAGTAACAGTAGGCACTCCCAAGGTGCATTTAGACAATTTGGCATAAAACTTGTTAGTAACCAATAGGTTCAAAATGGTAT CCAAATGCACAACATGGTCATTTAAAGTAGAGCTATATATTAGAATATCATCAAAGAAAAGAAGAACGAACCGGCAAAAATGTGGGTGCAATAGATCATT CATTGCCACTTGAAAAGTGGCCGGGGCATTGGTGAGGCTGAAAGGTATAACCAAGAACTCACAATGACCATCAAAAGTTCGGAAAGAAGTCTTATGAGTA TCTTCAGGTTTCATTGGAATCTGATGATAGCCCGATCAAGGATAGATCTTTGAAAAAATTGTTGCGCTCCCTAATTCATCCAATAATTCATCAATTGTCG TAATTGGGAAGCGGTCACGAACTATGATTGCATTCAGAGCTCAGTAATCCACACAAAACCGCTATGTGCCATCTTTTTTTTTTACCAATAAAACTGGTGA TGAAAATGGGCTAGTACTAGGTGTAATAATTCCATCTTTCAGCATATCTGCAATCATAGTAGTCATGGCTTCTTTTTGGGAATGAGGGTAACGGTAAGGT TTGAGGGAAATTGGGCTAGAGTTAGGTTGTAAGGTGATGGAATGGTCATGAGGGCGGGATGGGGGTAAGCCGTGAGGGCGTTGGAAAATGTCGTTGTATT TGGTGAGGACAGTTTGTATGGGAGGGTGAGTGGTTTTAGGCTGGTCTGTATGAAGTGTGGTTGTTGGTTGTAAGGGTATAAAAATCAATGTGTGGAAAGA AGCCACTGAATCTGTGTGAAGTAGACGAGTTAGTTGGTGTAGTGAGGATTGAGTAATGGGGGTTGTGGTATCCCCTTGGAGAGTAAGAGAATCATTCCCA ACCTTAAAGGTCATTGACAGAACAACAAAGTCTGAAATAATAGGTCCCAAGGTGCGCAACCACTCAATTCTCAGTACTACATTTGCACCTTTAATGGGTA GCAAATAGAAGGGAATATGAAATAATTTGTTTTGAAGAACAATGAGAGTATCAGAGCACAAACCCGTGCAATAAATGTGAGCTCCATTACCAACCATCAC TGGAAATTTTGGTGTCGGAGTTATGTTTAGTTGCAAGTGATGAGCAAGACGTGGTTGTAGAACATTGTGTGAACTGCCTGTGTCGACTAGGACCATAACA GCCTGCCCTACAATGGAACCCGTAAGCCGAAGGGTTTTTTGGGATGGCTGGCCTTCGAGGGCTTGTTTGGACAATTGAAAATGAATTAGATCCTCTATAG GTTGAACATGTTCAACTTTCACTGGTTCAAGAGAAATCAACAAATCTTCAGAAGTGGCAGATAAGTCATACACTAGAAGGAGTACAAACTGTCGACCTTG GCAGATGTGACCGGTTAGATATTTTTCGTCACAATTATAGCACAAACCTTGAGCTCGTCTTTCTTGCATTTGGGCAGTTGTGAGACGCCTAATAGGCATT ATGGAAACTGTGTTACTGTTGCCTACAGATGAAACTGAGTGGGCACGTTGGTTTGGTGCTGGAAAATTGTTTGTCCTAAATGGTCGAGGAAGTGCTGGTT TAGCGTCTTTGATTTTGGATTCCACCAACTTGGCCAACCCCAATGCTTCTACCATATCTGTAGGTCTAAGAATAGTTAATTCTCGCCTAATCTCAGGTTG TAATCCTGACAGGAAACAATTGAGAATAGACTCCGATGACAGCCCCCAGACTCTGCTATTAATTTGTTCAAACTTTTTTTGATAGGCAGCCACAGTTCCT GTCTGACATAGCTTAAAGAGTTCTGCTTGGTGATTGTCATAAGTAGAGGGACCAAAATAAATTTCCAGCGTGCGGGTAAAAGTTTCCCAATCTATGAATT CCCATTTAAAAATGCCCATTTATACCAACTTAAAGCCTCACCTTTCATATGAAAAGAAACAATATGCAACCGCTGGTCAGGTGGAATTTGATAGTACTGA AAAATTGTTCTGTGTGGAACAACCAGTCCAGAGGGTCTGAACCATCAAAGGGAAGTAGTTGAAGTTTAGGTGAGTTAGGGGCCTGTCCCATATTGGAACG TGGGCAAGGGTTTGTGGGGTTAAAAAAAGGGGCTACTGGTGTTTGTGGAAAAGTTGGGTAAGAGGTAGGTATTTGTTATGGTGAGTGAGACGTGGAAATG T BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83441; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_256343
| Blastp | Transposon Ty3-I Gag-Pol polyprotein from Saccharomyces with 29.17% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 38.68% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (YIL082W-A) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459949.1) |
| Pfam | Retrotransposon gag protein (PF03732.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |