| Id Trinity | FTRINITY_DN59174_c0_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_256434 |
| Sequence | AGCCATTCAAAAACAGAGTAGAAGAAAGCAACTAAAATCTCTATAACTTACAAAACCCACCACGCTTTTTTTCTAGGTTTTCTTTCTCTTCAATTCTCCA TTTCCTCTTCTCTCTCTCACAAAATTTTCACAACCCTAAACCTAATCATCGTCATCATTCTTTACACGCCATCTTCGATTTTCTATGCTGCTCTATCTAT TGCTTCAGATTTCAATCCAAGCTTCTTGATTTCAAGGTTTGCTCGTTGTTCTCACTGTTCGTCGTTCTCACAAGCTTTAATCGCCGCTGATCAGAGATCT TCGCTTTGAATTCGAATTGGAAACTTCAGGCATCGGATTGAGTTTATTATTGAAGGAACAAAACAAATCTATTTGATCGTTCGATTCTGTTGCGGATACA CTCCTCTGAAACCCTAATTTTGGTTTCTAATTGGGGAAGGATTAGGATTCACAAGTTCTGGATTCGCTTGACTTTTTCCTCACGCGGATTGTGTTTTATC TGAAGGAATCTGAATTCTATGGATTTTCGATGCGCTAGGGGTATGTGCTGATCAAGACGAAGATTTGGAGAATTTTAGGAGTGCTCCCAGCTTCGTGGTG GTTGGCTTTGTTCCATCTTATCCTTAGAAAAAAAATTAGAAAAGAGAAAAGTGAAAAAAAATCTTCGATATATTGTACTGTTTGATTGTTTCGAGTTTTA ATATTTCAAAGGCCTATTGTTTTATTAAATTTCAATTTCAAAGGCCCTTTTGATTATTTTTGTTCTTGTTATATTGCTTTGGTGTTGATCTTTTTTCTTA TAGATAAGAGAAAAGAGAAATATACCACCATGGCGGTGTATTATAAATTTAAGAGTGCAAGAGACTATGATTCAATTTCCATGGATGGCCCTTTCATCTC TGTTGGTACTTTGAAAGAAAAAATATTTGAAAACAAGCATTTAGGGAGAGGTACTGATTTCGACCTCGTGGTCACCAATGCCCAAACCAATGAAGGTTGG TTCTGATTTTTTTAATAAGCTCTTCTCTTCGAAAGTAGTGGTTTGGGAAGTTAATAAGAGTCTGGATTTTTTAGCTTAATTGTAAATTTAATAATAAACG CGTTTTACATATTCAATGGCTTTGAGGAGGGAGTTCATGGTTAACCTTTTCGGTGTTTATCATGCACCCAATAAAGCTACACTTATTACCAATGCTCTCT GCCATTGAAGATTGAACTGAAATTGGCCTCATTCGAAACTTACCACCCACTTCTCCATAAAATGCTCCTCAGACATAAGTATTTGTATGAAATAAGCAAG TCCTTGGGTTATTTTAGAGAGCCGAGAACTCTGTGTTTTATTAAATCAAAGATAAATTAGCCCTACTTGCTCACTTTATAGATATAAGCTTATATTTGAG GAGCCTAGTCCCACTCCCTTATATAAAAGAAAAAGGAAAGTAAATAAAATACTCTTAAATTAAAAGGAATAGGAACATGGTCAGTGTTTTCAGATGTAGT TATATTTGCAGCAACTACAGGCACCCAACTTTGAGAGATTTTTAGCATGGTAGTTCATGTATATTTGGCTTCATGAGTAGCATAGTTACATTGTTTTATA GTCGCTCTTTATCTTTGGAATTTCAGAATATCTTGATGAAGCTATGTTGATACCAAAAAATACCTCTGTGTTAGTTGGTCGGGTTCCAGGACGGCCACGT TTACCAATAGTCACCAAAATAGAGCAAAAGCTGGAAAATAAGACGGCAGAAACTGAACCTGATAACAGTAGCTTACCAGTTACCAATACATCTGCCATGG GATATACTGAAGATATTTATGAGGACGAGTTTGGCAACGATTTGTATCCAGATCCGGATGCACAGCCTGTCCAATCAAGCCACTTTGGCCTGGAGGCTCC TCTGACTAACAATGCTGATGAAGATCTAGACAGTAAGATTAAGGCCGTAGTGGATACTCCAGCCTTGGATTGGCAACGTCAAGATTTTGGTGGCGGTAGA GGTTTTGGAAGGGGTATGGGAGGAAGGATGGGAGGTGGGCGTGGTTTCGGGTTGGAGCGGAAGACACCTCCACAAGGCTATGTGTGTCATAGATGCAAGG TGTCTGGACATTTCATTCAGCACTGCCCTACAAACGGGGATCCAAATTTTGACGTCAAAAAAGTCAAGCAACCTACTGGTATTCCGCGATCGATGCTGAT GGTTAACCCACAAGGTTCATATGCATTGCCAAATGGCTCAGTAGCTGTCCTGAAGCCAAATGAGGCTGCTTTTGAGAAAGAAATAGAAGGGCTACCAACA TCAACACGTTCTGTGGGGGATCTACCTCCTGAGCTCCACTGCCCCTTGTGCAGTGATGTGATGAAAGATGCTGTGCTAACAAGCAAGTGTTGTTTTAAAA GCTTCTGTGACAAATGTATTAGGGACTACATAATGTCAAGGTCCATGTGCATATGTGGTGCCACAAATATTCTTGCCGATGATCTTCTGCCAAATAAGAC ATTAAGAGACACTATTAATCGTATATTGGAGGCAGGCAACAGCAGTGCTGAAAATGTGGGGAGCACTTTTCAAGTTCAAGATATGGAGTCTGCTCGCTGT CCACAGCCTAAGATTCCATCTCCAACCTCGTCGGCTGCATCAAAGGGAGAACTAAAGGTTTTACCCATTCATGAAGAAACAACAAATATACAAGAAACAG CTGATGATAATAAGGCTGTTACTGCTCAACATCAGACATCAGAGCAAGTAAGGATCACCAGAGCTGCTGATGTATCTGAAGCTACTCATGAGTCAGTGAG TGTAAAGGAGCAACCATCACAAGGGAGTGCTCGACCGGTTGAAGAAGAAGTGCAGCAAAACTTGGTTCCTACTGAGGCAGGAAAGAAAAAGAAGAAGAAG AAAATTCGTTTACCCACAAATGAAATGCAGTGGAAAAACCCACATGACTTTCCAGCTGAGAACTATATGATGCCAATGGGCCCACCTGCTGGGTATAATC CGTACTGGAATGGCATGCAACCTTGTATGGATGGATTTATGGCACCATATGCTGGGCCAATGCAAATGATGGGTTATGGTCTTGGCCCCTTGGACATGGC ATTTGCAAATGGTTTTCCACCAGACCCGTTTGGCATGCAGGGTTACATGATGCCTCCTGTTCCACCTCATAGGGATCTTGCTGAGTTCAGTATGGGGATG AATGCTCAACCTCCAGCTATGAGTAGAGAGCAGTTTGAAGCCCGGAAAGCTGATTTGCGGAGGAGGCGTGAAAATGAGAGACAGGGTGGAAGGGACTTCT CCAAAGACAGAGAGTTTGTTGCTAGGGAAGTGAGCAGTGTTGGGAATGGTTCTTCAATGAAATCAAAAACCAAGTCAGCAATTCCAGCACCGTCGTCGAA TAGCGACTACCATTCTCAGCGTCACCGTTCAGAACGGTTATCACCAGATAGATCTCGTTCTCCGATCAAAGTTGAACCT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83510; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_256434
| Blastp | E3 ubiquitin ligase PQT3-like from Arabidopsis with 52.2% of identity |
|---|---|
| Blastx | E3 ubiquitin ligase PQT3-like from Arabidopsis with 51.09% of identity |
| Eggnog | Retinoblastoma binding protein 6(COG5222) |
| Kegg | Link to kegg annotations (AT5G47430) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432666.1) |
| Pfam | Zinc knuckle (PF13696.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |