Id Trinity | FTRINITY_DN59187_c8_g3_i3 |
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Name Transcript | Ll_transcript_254448 |
Sequence | GTTTTTGATTCGGGCCACTAATCACAAAGAAAATGGTGTAGAAGTGTTTAGAATGAACAATGTGATATGAATGGACACATAAACCACCCAAAATGGTCAA GATATGAAAATTCTAGAGGGAAAAGGGTTGAACACGAGTGAGAAAGAAGATGGAGTTCAAAAAATGCAATTTTTTTCTTAAATACCTGCTCAGAGTAATC GGTTACTCACTTCTGAGTAATCGTTTACTCTAATTAAAAAATTTAAAATTTTCAAACAGCATGTTTGAGTAACCGGATACTCAAAAATGGGTAATCGGTT ACTGACTCTTGAAAAATCAATTTTTATGCAATTTAAAGCTATGAAAATGATTTTAACCCAAAAACTTGAAATATATAAACATAAACACATTTAAGTTCAT CGAGGATGCCTAATTCAAGCCTAATTTTGTAAAAAAGGTTCTTTTGCCAAAGGCTTAGTGAAAATGTCTGCTAGTTGGTTATAAGTATCAACAAATTCTA CAGATACATCTTTCTTTCGAACATGGTCCCTTAGGAAGTGATGTCTTATATCTATGTGTTTGGTTCTTGAATGCATAATTGTATTCTTTGTGAGATTTAT AGCACTAGTATTATCACATTTCAGCGGAGTGCAGCCTAAGTCTAAGCCATAATCTCGTAATTGTTGCTTAAGCCACAACACTTGGGTACAACAACTATCT GCTGCTATATATTCAGCATCAGCAGTGCTTAGAGTTACACATGCTTGTTTCTTGCAAGACCAAGAAACTAAAGCGTTGCCTAAAATGTGACAAGTACCAC ATGTACTTTTCCTCTCAGATTTCCATCCAGCAAAATCTGAATCTGAATATCTAACCAGTTCACATATACTTCCTTTAGGGTACCACAGTCCAACTTCAGT TGTACCTTTGAGATATTTCATAATTCTCTTAACAACAACTAGGTGTGATTCTTTAGGTTTAGATTGATAGCGTGCACACAGACATACACTAAACATTATA TCAGGTCTACTAACAGTTAAGTACATAAGAGATCTGATCATACCTCGATATTTAGATATTTCAATACATTTATCGGGTTCATCTGTATCAATATATGTTC CAGATCCCATAGGAGTAGCTATCGGCTTGCAGTCATCCATATCGATTCTTTTCAACAAGTCTTTGTAGTATTTCGATTGACTCACGAATATGCCATTATC AAGCTGTTTTATTTGAAGTCCAAGAAAGTAGTTCAACTTTCCCATCATGGACATTTCAAATTCTCCTTGCATCATTTTGCTAAAATCACTACACAAATTT TCATTAGTAGAACCGAAAATAATATCATCTACATAAATTTGAACTAATAAAGTATGATGATTTATTTTCTTTATAAATAAAGTAGTGTCGACCTTCCCTT TTGTGAAACCTTTTTTTGTTAGAAAGTTCGTTAGACAATCATACCATGCACTTAGATAAAAATAAATATAATAACAATGTTACCTATACCAATGATTTTC ATTTGATGTTCGAT BLAST |
Tissue | flowers |
Gene name | LI_gene_83646; |
Additional information | details; |
FPAB | abscising flower pedicels |
FPNAB | non-abscising flower pedicels |
LF1 | lower flowers stage 1 |
LF2 | lower flowers stage 2 |
LF3 | lower flowers stage 3 |
LF4 | lower flowers stage 4 |
UF1 | upper flowers stage 1 |
UF2 | upper flowers stage 2 |
UF3 | upper flowers stage 3 |
UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_254448
Blastp | Copia protein from Sophophora with 34.38% of identity |
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Blastx | Copia protein from Sophophora with 32.18% of identity |
Eggnog | - |
Kegg | - |
CantataDB | Link to cantataDB annotations (CNT0000573) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_016192204.1) |
Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |