Ll_transcript_15677

• Id Trinity: FTRINITY_DN59222_c1_g1_i10
• Name Transcript: Ll_transcript_15677
• Sequence: AAATAAACCGCAACACCCATTTGTAACATAACAGTTGATATGCCACTTTCCTTCTCCACCTTGTTCTGCATTCATTTGTATCGGCACTTTGCGAGAGATA TCTCAATTATTCACCCACTCCGGCGATGGCTCAGCCACTCGTGAAGAAAGACGATGACCGTGACGATGAAGATGAGTATTCCCCATTTTTGGGAATTGAA AAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTGCTTAATC AGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCGGTGACTAAACTTTTCCAGTCTCGCGATCTTGGGTTAAGAAGAATGGTCTACTT GATTATTAAGGAACTCTCCCCCTCAGCCGATGAGGTTATTATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAAT GCCATTCGTGTGCTCTGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAACGGTATTTGAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAA GTGCAGCCCTAGTTAGCGGCATTCATATTCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGC TCTTGTACAATTTCATGCCCTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACCGTT CGCTCACCTTTGGCCCAATGCCTTCTGATCCGTTATACAAGTCAGGTCATTCGTGAGTCAGGGAATAATAACACACAATCCGGGGACCGTCTCTTCTATG ATTATCTTGAGAGTTGCCTTCGGCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAATTACAGAGCTCAATGGCGTAACAAGCCGGGAATTAAC TCCAGCTATTACTGTTCTTCAGCTTTTTTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACACCCA ATGGCAGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAAAACAGAAGCATTGCTACACTTGCTATTACTACTCTCTTGAAGACAGGAA ATGAATCAAGTGTGGACCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATT ATGTTTGAAGTTCCCATTAAAATATAGATCTCTGATGAATTTCCTGAGTAGCATTCTCAGGGAAGAAGGTGGGTTTGATTACAAGAAAGCAATTGTAGAT TCAATTGTTATTCTTATTAGAGACATTCCTGATGCAAAGGAAAGCGGGTTGCTTCATTTGTGTGAATTCATTGAAGATTGTGAATTCACTTATTTGTCCA CGCAGATACTGCACTTCCTGGGAGTTGAAGGGCCAAAAACATTAGACCCCAGCAAATATATTCGTTATATCTATAACAGAGTGCATCTTGAGAATGCAAC TGTCAGGGCCAGTGCTGTGAGCACACTGGCTAAGTTTGGTGCTGCAGTTGATGGATTGAAGCCTCACATATTTGTCCTCCTAAGGCGATGTCTTTTTGAC AATGACGATGAGGTTCGTGATAGGGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTGAAGGACTTTCTCT TTGGGTCATTTGATATCCCACTTGTCAATCTAGAGACTAGTTTGAAAAATTATGAGCCTTCTGAAGAGGCTTTTGACATTAACTCGGTGCCCAAGGTGGT CAAGTCTCAGCCTCTTGCAGAGAAGAAAGCCACAGGTAAAAAACCAACGGGTTTGGGTGCTCCTCTCAGTGCTCCCCCATCTACTGCAGATGCATATGAA AGGCTGCTGTTGTCCATTCCTGAGTTTGCAAATTTTGGGAAGCATTTTAAGTCCTCACCGCCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTA ATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAACACAATACCGGAACAGTTATTGGAAGATGTTATTGTAATTGTGGA TGCATCAGAAGCAGAGGAGTTTTCTGAGGTTTTTGCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAGACTTTTGTGGCATTCGAGAAACCC GAGGGACTGCCAACAGCTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGGTTGACCCAACCACTGGCGAGGCAGATGATGATGGAGTTGAAG ATGAATACCAGCTTGAAGATCTGGAGGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAATGCATGGGAAAGTATGGGCCCTGA TTCTGAGCGAGTGGATGAATATGGTCTTGGCCCAAGGGAGAGCTTGGCTGAAGCTGTAAATACAGTCATCAACCTTCTTGGAATGCAGCCTTGTGAGGTA AGCCAGCGTATCTGTTGCTGCTCTGGTAAATGTTTCTCATGTGAGCTGTTCGCATTATTTTTGTTGCAATTTAAGGGAATAATTTTCCGTTTTAGTTCTG CCAAAAGACCATTGTAATGTTGCTGTCTATCAAGATAGGATTACAGATTTGTTTTTTATGTATAATTTATCAACCCTTATATTTCTATGTTGTTTTCTGT TACATAATCTTTTACACCTTTATATCCGTCTTTCTATCCTATCACATCATCAATACCATCTATCATCTTCTCTTCTCTTTCTATCTCTTTCATCCTAGAC CGACCTACACCTCTTTGAAATATGTAAGATGGTCATTTTGCATAGTTTATTTATTATTAAAAGTTGGTTTTCTCGTAAGTATTACTATAAGGTATACATT TTTTGTACCTTGAAGCTGAACTTTACGACATTCCCAAACTCAAACCACCAATATGTCCTTTTATGCATGTAAAGTGTTGTTTGGGCAGAATGCTTTCTTA TGCAAACTTGCAGACATACACATTCACTGTGCATAGGGAACCTTACTTCAAAGAGATTCTTAGGTGCTAGAGGGCTAGGAGACTGTTTTTCCATGCACAA AGATCAAGCCCAAGCGATGATAGTTAGATGCTTAGATGCAAATACATTTGATGCATCTCAATGCTGTTGTATGCACAAAGAATCTAACGTAGGAGATTTT TAGGTCCTCATGGGAAGACATTTCTTTTACTCCATGAGGCACTCAAGAATTCCTCAAATGAATATAGTATCTACAACCCACTGTCTGCTTATCATTTATT CACTGGTATATTCAGGGAAGATGATAACTTTTATTTGTTCACTATGTGCAGGGCACAGAAGTTGTTCCACCCAATTCAAGGTCACACACATGCTTAATGT CAGGTGTATTCATAGGGAAT
• Tissue: flowers
• Gene name: LI_gene_83979;
• Additional information: details;

Expression of Ll_transcript_15677

FPKM

• FPAB: 0.3
• FPNAB: 0.3
• LF1: 0.7
• LF2: 0.2
• LF3: 0.2
• LF4: 0.3
• UF1: 0.4
• UF2: 0.5
• UF3: 0.3
• UF4: 0.2

Labels

• FPAB: abscising flower pedicels
• FPNAB   : non-abscising flower pedicels
• LF1: lower flowers stage 1
• LF2: lower flowers stage 2
• LF3: lower flowers stage 3
• LF4: lower flowers stage 4
• UF1: upper flowers stage 1
• UF2: upper flowers stage 2
• UF3: upper flowers stage 3
• UF4: upper flowers stage 4

Annotations of Ll_transcript_15677

• Blastp: Coatomer subunit gamma from Arabidopsis with 83.2% of identity
• Blastx: Coatomer subunit gamma-2 from Oryza sativa with 84.28% of identity
• Eggnog: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240)
• Kegg: Link to kegg annotations (AT4G34450)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019448506.1)
• Pfam: Adaptin N terminal region (PF01602.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;