| Id Trinity | FTRINITY_DN59222_c1_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_15678 |
| Sequence | CTTACACTATTATCGTATTATTATTACAATTAGTTCTATTTTATTTTATCGCACCCTTCTTATACCTTCATTTATAAACTTGAGTGGTGCACTTGCATAG GCACTTGGTGAGAGAAAAATATTGATTAGCGACCAGATCTCATATATTCACATACTCCGGCGATGGCTCAGCCACTCGTGAAGAAAGACGATGACCGTGA CGATGAAGATGAGTATTCCCCATTTTTGGGAATTGAAAAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGT TCACAGGTTATCACAAAACTTTTATACCTGCTTAATCAGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCGGTGACTAAACTTTTCC AGTCTCGCGATCTTGGGTTAAGAAGAATGGTCTACTTGATTATTAAGGAACTCTCCCCCTCAGCCGATGAGGTTATTATCGTTACAAGCTCTCTCATGAA GGACATGAATAGTAAGACTGATATGTATAGGGCAAATGCCATTCGTGTGCTCTGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAACGGTATTTG AAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATTCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGA GCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTACAATTTCATGCCCTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGT TAGCAAGCTGGTTACCAGCTTGACAAGGGGAACCGTTCGCTCACCTTTGGCCCAATGCCTTCTGATCCGTTATACAAGTCAGGTCATTCGTGAGTCAGGG AATAATAACACACAATCCGGGGACCGTCTCTTCTATGATTATCTTGAGAGTTGCCTTCGGCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAA TTACAGAGCTCAATGGCGTAACAAGCCGGGAATTAACTCCAGCTATTACTGTTCTTCAGCTTTTTTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGC TGTCCGCACCTTGAACAAGGTGGCAATGACACACCCAATGGCAGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAAAACAGAAGCATT GCTACACTTGCTATTACTACTCTCTTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATG AGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTATGTTTGAAGTTCCCATTAAAATATAGATCTCTGATGAATTTCCTGAGTAGCATTCTCAGGGA AGAAGGTGGGTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTTATTCTTATTAGAGACATTCCTGATGCAAAGGAAAGCGGGTTGCTTCATTTGTGT GAATTCATTGAAGATTGTGAATTCACTTATTTGTCCACGCAGATACTGCACTTCCTGGGAGTTGAAGGGCCAAAAACATTAGACCCCAGCAAATATATTC GTTATATCTATAACAGAGTGCATCTTGAGAATGCAACTGTCAGGGCCAGTGCTGTGAGCACACTGGCTAAGTTTGGTGCTGCAGTTGATGGATTGAAGCC TCACATATTTGTCCTCCTAAGGCGATGTCTTTTTGACAATGACGATGAGGTTCGTGATAGGGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCA GTTGTTGAGACTGATAAAGATGTGAAGGACTTTCTCTTTGGGTCATTTGATATCCCACTTGTCAATCTAGAGACTAGTTTGAAAAATTATGTAAGCCATC TCCATTTTCTTTCCTTTCATTAGTTAAGGGCTTTTCTCAACTTTTTTATATGTGAATCCAGGAGCCCTCAGATGAGGCTTTTGACATCAACTCGGTGGCC AAGGATGTCAAGTCTCTGCCTCTTGCAGAGAAGAAAGCCCAAGGTAAAAAGCCAACTGGTTTGGGTGCTCCCTCTAGTGCCCCCCCATCTACTGCAGATG CATATGAAAGGCTGCTGCTGTCCATTCCTGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATA TGCTGTTAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAATACAATACCAGAACAGTTGTTGGAAGATGTTATCGTA ATCGTGGATGCATCAGAAGCGGAAGAGTTTTCCGAGGTTTTCGCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAGACCTTTGTGGCATTTG AGAAGTCTGAGGGGTTGGCACCAGCTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGGTTGACCCAACCACTGGCGAGGCAGATGATGATGG AGTTGAAGATGAATACCAGCTTGAAGATCTGGAGGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAATGCATGGGAAAGCTTG GACCCTGATTCTGAACGAGTGGATGAATATGGTCTCGGCCCAAGAGAGAGCTTGGCTGAAGCTGTAAATACAGTCATCAATCTTCTTGGATTGCAGCCTT GTGAGGGCACAGAAGTTGTTCCACCCAATTCAAGGTCACACTCGTGCTTATTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTGCGATTGTCTTT TGGACTTGACGGTCCAAAGGATATTGCAATGAAACTGTCTGTCAGATCCGAGGATGATGCTGTCAGCGATTTCATTCATGAGATTGTGGCAAGTGGCTAG TTCTCTAAGTCAAGAATTGTTGACTCAACTCAGCCTTTCTTCTTGTTAATGAGATTGGAGTTAAATAGGCACATAGATAGATGTGTGTAAAGAATTGCAA AACTGAACGTTGAGCTTAGCATATTGCGATTTATTTGTCCCTCAAAGCTTGTTAGACGTAGCAGCGATACCTCAAGTCCCAAACTTCCATCCTCGTGATT ATACTTTTTTAGCAAATGTTATATGAATTTTGAGGATTTTGCCGTAATATTTGTTTCATCAATGAACTGGATTTTTGTTCAGCAGTTGTTTTGTCTAAAA ATTACGCCTATATTTAGGGCTACATTTAAATAAGATTATAGTCTTTATGTTTTTTATAAGATTGTCATTGGATATTAC BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83979; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_15678
| Blastp | Coatomer subunit gamma-2 from Oryza sativa with 89.95% of identity |
|---|---|
| Blastx | Coatomer subunit gamma-2 from Oryza sativa with 89.95% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240) |
| Kegg | Link to kegg annotations (4342665) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448506.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |