| Id Trinity | FTRINITY_DN59222_c1_g1_i15 |
|---|---|
| Name Transcript | Ll_transcript_15683 |
| Sequence | CTTACACTATTATCGTATTATTATTACAATTAGTTCTATTTTATTTTATCGCACCCTTCTTATACCTTCATTTATAAACTTGAGTGGTGCACTTGCATAG GCACTTGGTGAGAGAAAAATATTGATTAGCGACCAGATCTCATATATTCACATACTCCGGCGATGGCTCAGCCACTCGTGAAGAAAGACGATGACCGTGA CGATGAAGATGAGTATTCCCCATTTTTGGGAATTGAAAAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGT TCACAGGTTATCACAAAACTTTTATACCTGCTTAATCAGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCGGTGACTAAACTTTTCC AGTCTCGCGATCTTGGGTTAAGAAGAATGGTCTACTTGATTATTAAGGAACTCTCCCCCTCAGCCGATGAGGTTATTATCGTTACAAGCTCTCTCATGAA GGACATGAATAGTAAGACTGATATGTATAGGGCAAATGCCATTCGTGTGCTCTGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAACGGTATTTG AAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATTCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGA GCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTACAATTTCATGCCCTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGT TAGCAAGCTGGTTACCAGCTTGACAAGGGGAACCGTTCGCTCACCTTTGGCCCAATGCCTTCTGATCCGTTATACAAGTCAGGTCATTCGTGAGTCAGGG AATAATAACACACAATCCGGGGACCGTCTCTTCTATGATTATCTTGAGAGTTGCCTTCGGCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAA TTACAGAGCTCAATGGCGTAACAAGCCGGGAATTAACTCCAGCTATTACTGTTCTTCAGCTTTTTTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGC TGTCCGCACCTTGAACAAGGTGGCAATGACACACCCAATGGCAGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAAAACAGAAGCATT GCTACACTTGCTATTACTACTCTCTTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATG AGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTATGTTTGAAGTTCCCATTAAAATATAGATCTCTGATGAATTTCCTGAGTAGCATTCTCAGGGA AGAAGGTGGGTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTTATTCTTATTAGAGACATTCCTGATGCAAAGGAAAGCGGGTTGCTTCATTTGTGT GAATTCATTGAAGATTGTGAATTCACTTATTTGTCCACGCAGATACTGCACTTCCTGGGAGTTGAAGGGCCAAAAACATTAGACCCCAGCAAATATATTC GTTATATCTATAACAGAGTGCATCTTGAGAATGCAACTGTCAGGGCCAGTGCTGTGAGCACACTGGCTAAGTTTGGTGCTGCAGTTGATGGATTGAAGCC TCACATATTTGTCCTCCTAAGGCGATGTCTTTTTGACAATGACGATGAGGTTCGTGATAGGGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCA GTTGTTGAGACTGATAAAGATGTGAAGGACTTTCTCTTTGGGTCATTTGATATCCCACTTGTCAATCTAGAGACTAGTTTGAAAAATTATGAGCCTTCTG AAGAGGCTTTTGACATTAACTCGGTGCCCAAGGTGGTCAAGTCTCAGCCTCTTGCAGAGAAGAAAGCCACAGGTAAAAAACCAACGGGTTTGGGTGCTCC TCTCAGTGCTCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTGTTGTCCATTCCTGAGTTTGCAAATTTTGGGAAGCATTTTAAGTCCTCACCGCCT GTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAACACAATAC CGGAACAGTTATTGGAAGATGTTATTGTAATTGTGGATGCATCAGAAGCAGAGGAGTTTTCTGAGGTTTTTGCCAAGCCTCTCAGATCTCTTCCTTATGA TTCACCTGGGCAGACTTTTGTGGCATTCGAGAAACCCGAGGGACTGCCAACAGCTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGGTTGAC CCAACCACTGGCGAGGCAGATGATGATGGAGTTGAAGATGAATACCAGCTTGAAGATCTGGAGGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGT CTAATTTCAGGAATGCATGGGAAAGCTTGGACCCTGATTCTGAACGAGTGGATGAATATGGTCTCGGCCCAAGAGAGAGCTTGGCTGAAGCTGTAAATAC AGTCATCAATCTTCTTGGATTGCAGCCTTGTGAGGTAAGCCAATGTATCGATTGCTGCATCGGTTAATGTTTCTTGTTATGTGGCCCTTTTTATTATACT GGTTATGAGCTGTTTGCACTATTTTTACTGCAATTTAATGCTCTGCTTGTTAGGTTCTGCCAAAAGACCATTATAATGTTGCTGTCTATCAAGATTAGAT GACAGATTTGTTTTTATGTATAATTTATTATCAGGAGTTAGTGTTCTCTTAATATAATAGTACTTTAAGGTGCATATCCTTTGAAGTTGAACTGTGACAT TGGCAAACTCAAACCACAAAGATGTCCTTGTGTGTGTTTAAGATGTTGTTTGGGCAGAATACTTTTGGTTGGATATGTGTAGCCACACACATGCATAGTC AGACTTCAAAGACATTTTTAGGTGCATGGGGGTTATTTGGTTAAGAGACTTCTCCCCCTTGCACAAAGATCATGCCCAGGTGATTAGAGTTTGATTTAAC TAACATGTAGATGCGGATGCAAATACATTTGACACATTTAAAATATCATAGTTCATTTGAAAGCTATGGATGTTGAACTTTGTGACATTGACAAACTCCA ACCATGAGGTGGTTATGGATGCGCACATAAATACTGTTGTATGCACAGAGAATATAAATTAGATGAGATTTTTAGGTGCTGATGGGAAGGCATTTGTCTT GCTGCATGAAGCACTTGAGAATCAGTTATTCATTGGTATCTCATATTCACTGGTATATTGGAGGAAGGCAATAACTTTCTAATAATTTTTATTTGTTCAC TATGTGCAGGGCACAGAAGTTGTTCCACCCAATTCAAGGTCACACTCGTGCTTATTGTCAGGTGTATTCATAGGGAAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83979; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_15683
| Blastp | Coatomer subunit gamma from Arabidopsis with 85.77% of identity |
|---|---|
| Blastx | Coatomer subunit gamma from Arabidopsis with 85.77% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240) |
| Kegg | Link to kegg annotations (AT4G34450) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448506.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |