| Id Trinity | FTRINITY_DN59222_c1_g1_i16 |
|---|---|
| Name Transcript | Ll_transcript_15685 |
| Sequence | CTTACACTATTATCGTATTATTATTACAATTAGTTCTATTTTATTTTATCGCACCCTTCTTATACCTTCATTTATAAACTTGAGTGGTGCACTTGCATAG GCACTTGGTGAGAGAAAAATATTGATTAGCGACCAGATCTCATATATTCACATACTCCGGCGATGGCTCAGCCACTCGTGAAGAAAGACGATGACCGTGA CGATGAAGATGAGTATTCCCCATTTTTGGGAATTGAAAAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGT TCACAGGTTATCACAAAACTTTTATACCTGCTTAATCAGGGAGAGTCATTTACAAAGGTCGAAGCCACAGAAGTGTTCTTTTCGGTGACTAAACTTTTCC AGTCTCGCGATCTTGGGTTAAGAAGAATGGTCTACTTGATTATTAAGGAACTCTCCCCCTCAGCCGATGAGGTTATTATCGTTACAAGCTCTCTCATGAA GGACATGAATAGTAAGACTGATATGTATAGGGCAAATGCCATTCGTGTGCTCTGTCGTATCACGGATGGAACCCTCCTTACCCAAATTGAACGGTATTTG AAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATTCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGA GCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTACAATTTCATGCCCTGGCTTTGCTACATCAGATACGGCAAAATGATCGATTAGCTGT TAGCAAGCTGGTTACCAGCTTGACAAGGGGAACCGTTCGCTCACCTTTGGCCCAATGCCTTCTGATCCGTTATACAAGTCAGGTCATTCGTGAGTCAGGG AATAATAACACACAATCCGGGGACCGTCTCTTCTATGATTATCTTGAGAGTTGCCTTCGGCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAAGGCAA TTACAGAGCTCAATGGCGTAACAAGCCGGGAATTAACTCCAGCTATTACTGTTCTTCAGCTTTTTTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGC TGTCCGCACCTTGAACAAGGTGGCAATGACACACCCAATGGCAGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAAAACAGAAGCATT GCTACACTTGCTATTACTACTCTCTTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATG AGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTATGTTTGAAGTTCCCATTAAAATATAGATCTCTGATGAATTTCCTGAGTAGCATTCTCAGGGA AGAAGGTGGGTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTTATTCTTATTAGAGACATTCCTGATGCAAAGGAAAGCGGGTTGCTTCATTTGTGT GAATTCATTGAAGATTGTGAATTCACTTATTTGTCCACGCAGATACTGCACTTCCTGGGAGTTGAAGGGCCAAAAACATTAGACCCCAGCAAATATATTC GTTATATCTATAACAGAGTGCATCTTGAGAATGCAACTGTCAGGGCCAGTGCTGTGAGCACACTGGCTAAGTTTGGTGCTGCAGTTGATGGATTGAAGCC TCACATATTTGTCCTCCTAAGGCGATGTCTTTTTGACAATGACGATGAGGTTCGTGATAGGGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCA GTTGTTGAGACTGATAAAGATGTGAAGGACTTTCTCTTTGGGTCATTTGATATCCCACTTGTCAATCTAGAGACTAGTTTGAAAAATTATGAGCCTTCTG AAGAGGCTTTTGACATTAACTCGGTGCCCAAGGTGGTCAAGTCTCAGCCTCTTGCAGAGAAGAAAGCCACAGGTAAAAAACCAACGGGTTTGGGTGCTCC TCTCAGTGCTCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTGTTGTCCATTCCTGAGTTTGCAAATTTTGGGAAGCATTTTAAGTCCTCACCGCCT GTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAACACAATAC CGGAACAGTTATTGGAAGATGTTATTGTAATTGTGGATGCATCAGAAGCAGAGGAGTTTTCTGAGGTTTTTGCCAAGCCTCTCAGATCTCTTCCTTATGA TTCACCTGGGCAGACTTTTGTGGCATTCGAGAAACCCGAGGGACTGCCAACAGCTGGAAAATTTTCTAACATTCTGAAATTTATTGTCAAAGAGGTTGAC CCAACCACTGGCGAGGCAGATGATGATGGAGTTGAAGATGAATACCAGCTTGAAGATCTGGAGGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGT CTAATTTCAGGAATGCATGGGAAAGTATGGGCCCTGATTCTGAGCGAGTGGATGAATATGGTCTTGGCCCAAGGGAGAGCTTGGCTGAAGCTGTAAATAC AGTCATCAACCTTCTTGGAATGCAGCCTTGTGAGGTAAGCCAGCGTATCTGTTGCTGCTCTGGTAAATGTTTCTCATGTGAGCTGTTCGCATTATTTTTG TTGCAATTTAAGGGAATAATTTTCCGTTTTAGTTCTGCCAAAAGACCATTGTAATGTTGCTGTCTATCAAGATAGGATTACAGATTTGTTTTTTATGTAT AATTTATCAACCCTTATATTTCTATGTTGTTTTCTGTTACATAATCTTTTACACCTTTATATCCGTCTTTCTATCCTATCACATCATCAATACCATCTAT CATCTTCTCTTCTCTTTCTATCTCTTTCATCCTAGACCGACCTACACCTCTTTGAAATATGTAAGATGGTCATTTTGCATAGTTTATTTATTATTAAAAG TTGGTTTTCTCGTAAGTATTACTATAAGGTATACATTTTTTGTACCTTGAAGCTGAACTTTACGACATTCCCAAACTCAAACCACCAATATGTCCTTTTA TGCATGTAAAGTGTTGTTTGGGCAGAATGCTTTCTTATGCAAACTTGCAGACATACACATTCACTGTGCATAGGGAACCTTACTTCAAAGAGATTCTTAG GTGCTAGAGGGCTAGGAGACTGTTTTTCCATGCACAAAGATCAAGCCCAAGCGATGATAGTTAGATGCTTAGATGCAAATACATTTGATGCATCTCAATG CTGTTGTATGCACAAAGAATCTAACGTAGGAGATTTTTAGGTCCTCATGGGAAGACATTTCTTTTACTCCATGAGGCACTCAAGAATTCCTCAAATGAAT ATAGTATCTACAACCCACTGTCTGCTTATCATTTATTCACTGGTATATTCAGGGAAGATGATAACTTTTATTTGTTCACTATGTGCAGGGCACAGAAGTT GTTCCACCCAATTCAAGGTCACACACATGCTTAATGTCAGGTGTATTCATAGGGAAT BLAST |
| Tissue | flowers |
| Gene name | LI_gene_83979; |
| Additional information | details; |
| FPAB | abscising flower pedicels |
| FPNAB | non-abscising flower pedicels |
| LF1 | lower flowers stage 1 |
| LF2 | lower flowers stage 2 |
| LF3 | lower flowers stage 3 |
| LF4 | lower flowers stage 4 |
| UF1 | upper flowers stage 1 |
| UF2 | upper flowers stage 2 |
| UF3 | upper flowers stage 3 |
| UF4 | upper flowers stage 4 |
Annotations of Ll_transcript_15685
| Blastp | Coatomer subunit gamma from Arabidopsis with 83.2% of identity |
|---|---|
| Blastx | Coatomer subunit gamma-2 from Oryza sativa with 84.28% of identity |
| Eggnog | The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity)(COG5240) |
| Kegg | Link to kegg annotations (AT4G34450) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448506.1) |
| Pfam | Adaptin N terminal region (PF01602.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |